(Q34649536)

3 August 2017

title

Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq (English)

1 reference

3 August 2017

0 references

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1 reference

Giardia intestinalis

1 reference

1 reference

Jon Jerlström-Hultqvist

2

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Staffan G Svärd

object named as

Staffan G Svärd

7

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Oscar Franzén

1

object named as

Oscar Franzén

1 reference

3 August 2017

Elin Einarsson

3

0 references

author name string

Johan Ankarklev

4

1 reference

3 August 2017

Marcela Ferella

5

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3 August 2017

Björn Andersson

6

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3 August 2017

publication date

28 March 2013

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PLOS Computational Biology

3 August 2017

published in

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3 August 2017

volume

9

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3 August 2017

issue

3

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3 August 2017

page(s)

e1003000

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Creative Commons Attribution 4.0 International

3 August 2017

copyright license

start time

28 March 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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7 July 2018

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Identification and analysis of the RNA degrading complexes and machinery of Giardia lamblia using an in silico approach

7 July 2018

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A microRNA derived from an apparent canonical biogenesis pathway regulates variant surface protein gene expression in Giardia lamblia

7 July 2018

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Gene regulation in Giardia lambia involves a putative microRNA derived from a small nucleolar RNA

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Elongation factor 1-alpha is released into the culture medium during growth of Giardia intestinalis trophozoites.

7 July 2018

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Post-transcriptional repair of a split heat shock protein 90 gene by mRNA trans-splicing

7 July 2018

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7 July 2018

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Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate

7 July 2018

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The transcriptional response to encystation stimuli in Giardia lamblia is restricted to a small set of genes

7 July 2018

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The Giardia lamblia vsp gene repertoire: characteristics, genomic organization, and evolution

7 July 2018

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Regulation of mRNA translation and stability by microRNAs

7 July 2018

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7 July 2018

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Behind the smile: cell biology and disease mechanisms of Giardia species

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Variation in Giardia: towards a taxonomic revision of the genus

7 July 2018

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Antigenic variation in Giardia lamblia is regulated by RNA interference

7 July 2018

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snoRNA, a novel precursor of microRNA in Giardia lamblia

7 July 2018

1 reference

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UPF1, a conserved nonsense-mediated mRNA decay factor, regulates cyst wall protein transcripts in Giardia lamblia

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia

7 July 2018

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7 July 2018

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Bidirectional transcription is an inherent feature of Giardia lamblia promoters and contributes to an abundance of sterile antisense transcripts throughout the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Giardia lamblia-induced changes in gene expression in differentiated Caco-2 human intestinal epithelial cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

The biology of intron gain and loss.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

An ancient spliceosomal intron in the ribosomal protein L7a gene (Rpl7a) of Giardia lamblia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Giardia intestinalis: molecular characterization of UDP-N-acetylglucosamine pyrophosphorylase.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

The zoonotic significance and molecular epidemiology of Giardia and giardiasis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Encystation-specific regulation of the cyst wall protein 2 gene in Giardia lamblia by multiple cis-acting elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

The deep roots of eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

A spliceosomal intron in Giardia lamblia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Biology of Giardia lamblia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Variant-specific surface protein switching in Giardia lamblia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

A kingdom-level phylogeny of eukaryotes based on combined protein data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Patterns of variant polyadenylation signal usage in human genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Gene ontology: tool for the unification of biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Developmental gene regulation in Giardia lamblia: first evidence for an encystation-specific promoter and differential 5' mRNA processing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

A signal recognition particle receptor gene from the early-diverging eukaryote, Giardia lamblia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Developmentally regulated transcripts and evidence of differential mRNA processing in Giardia lamblia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Cysteine-rich variant surface proteins of Giardia lamblia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003000

Split introns in the genome of Giardia intestinalis are excised by spliceosome-mediated trans-splicing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003000

Transcriptome analyses of the Giardia lamblia life cycle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003000

Transcriptional changes in Giardia during host-parasite interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003000

Identification of novel transcripts in annotated genomes using RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003000

pIRS: Profile-based Illumina pair-end reads simulator

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003000

Capped mRNA with a single nucleotide leader is optimally translated in a primitive eukaryote, Giardia lamblia

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003000

Numerous fragmented spliceosomal introns, AT-AC splicing, and an unusual dynein gene expression pathway in Giardia lamblia.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Initiator and upstream elements in the alpha2-tubulin promoter of Giardia lamblia

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610916

Chronic giardiasis: studies on drug sensitivity, toxin production, and host immune response

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23555231

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Giardia infection in pigs: detection and in vitro isolation of trophozoites of the Giardia intestinalis group

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23555231

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Epigenetic mechanisms regulate stage differentiation in the minimized protozoan Giardia lamblia

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23555231

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003000

1 reference

journals/ploscb/FranzenJEAFAS13

3 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

3 August 2017

1 reference