(Q34732534)

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Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences.

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25 February 2020

Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences (English)

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25 February 2020

Escherichia coli

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whole genome sequencing

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based on heuristic

inferred from title

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25 February 2020

María P Garcillán-Barcia

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25 February 2020

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25 February 2020

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25 February 2020

Fernando de la Cruz

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25 February 2020

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Val F Lanza

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25 February 2020

Teresa M Coque

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18 December 2014

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25 February 2020

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25 February 2020

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25 February 2020

12

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25 February 2020

e1004766

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25 February 2020

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Creative Commons Attribution 4.0 International

18 December 2014

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Cytoscape

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Europe PubMed Central

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Escherichia coli ST131, an intriguing clonal group

1 reference

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7 July 2018

Molecular epidemiology of KPC-producing Escherichia coli: occurrence of ST131-fimH30 subclone harboring pKpQIL-like IncFIIk plasmid.

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Complete Genome Sequence of Phage-Like Plasmid pECOH89, Encoding CTX-M-15

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Global dissemination of a multidrug resistant Escherichia coli clone

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Comparative genomic analysis of KPC-encoding pKpQIL-like plasmids and their distribution in New Jersey and New York Hospitals

1 reference

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Fluoroquinolone-resistant Escherichia coli sequence type 131 isolates causing bloodstream infections in a canadian region with a centralized laboratory system: rapid emergence of the H30-Rx sublineage

1 reference

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Rapid and specific detection, molecular epidemiology, and experimental virulence of the O16 subgroup within Escherichia coli sequence type 131.

1 reference

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Complete sequence of a KPC-producing IncN multidrug-resistant plasmid from an epidemic Escherichia coli sequence type 131 strain in China

1 reference

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7 July 2018

The epidemic of extended-spectrum-β-lactamase-producing Escherichia coli ST131 is driven by a single highly pathogenic subclone, H30-Rx

1 reference

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Evolution and dynamics of megaplasmids with genome sizes larger than 100 kb in the Bacillus cereus group

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Diverse broad-host-range plasmids from freshwater carry few accessory genes

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kClust: fast and sensitive clustering of large protein sequence databases

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Escherichia coli sequence type 131 (ST131) subclone H30 as an emergent multidrug-resistant pathogen among US veterans

1 reference

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7 July 2018

Four main virotypes among extended-spectrum-β-lactamase-producing isolates of Escherichia coli O25b:H4-B2-ST131: bacterial, epidemiological, and clinical characteristics.

1 reference

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Complete nucleotide sequence of a blaKPC-harboring IncI2 plasmid and its dissemination in New Jersey and New York hospitals

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Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli

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Ordering the bestiary of genetic elements transmissible by conjugation.

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Potential impact of environmental bacteriophages in spreading antibiotic resistance genes

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Beginner's guide to comparative bacterial genome analysis using next-generation sequence data

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7 July 2018

Antibiotic resistance shaping multi-level population biology of bacteria

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7 July 2018

Plasmids and the spread of resistance

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7 July 2018

A quorum-sensing-induced bacteriophage defense mechanism

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Bacterial genomes in epidemiology--present and future.

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Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen

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Horizontal gene transfer and the evolution of bacterial and archaeal population structure

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Paradigms of pathogenesis: targeting the mobile genetic elements of disease

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Detection of quinolone-resistant Escherichia coli isolates belonging to clonal groups O25b:H4-B2-ST131 and O25b:H4-D-ST69 in raw sewage and river water in Barcelona, Spain

1 reference

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Complete sequence of pJIE186-2, a plasmid carrying multiple virulence factors from a sequence type 131 Escherichia coli O25 strain

1 reference

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7 July 2018

Complete genome sequence of bacteriophage SSU5 specific for Salmonella enterica serovar Typhimurium rough strains

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High metabolic potential may contribute to the success of ST131 uropathogenic Escherichia coli

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IncA/C plasmids: An emerging threat to human and animal health?

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Characterization of an IncFII plasmid encoding NDM-1 from Escherichia coli ST131.

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Dogs of nomadic pastoralists in northern Kenya are reservoirs of plasmid-mediated cephalosporin- and quinolone-resistant Escherichia coli, including pandemic clone B2-O25-ST131.

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Characterization of globally spread Escherichia coli ST131 isolates (1991 to 2010)

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Features of infections due to Klebsiella pneumoniae carbapenemase-producing Escherichia coli: emergence of sequence type 131.

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Comparison of Escherichia coli ST131 pulsotypes, by epidemiologic traits, 1967-2009.

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Virulence potential and genomic mapping of the worldwide clone Escherichia coli ST131.

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New insights into the bacterial fitness-associated mechanisms revealed by the characterization of large plasmids of an avian pathogenic E. coli

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Insights into a multidrug resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: genome analysis and virulence mechanisms

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Complete sequence of pJIE143, a pir-type plasmid carrying ISEcp1-blaCTX-M-15 from an Escherichia coli ST131 isolate

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The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation

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Recombination in IS26 and Tn2 in the evolution of multiresistance regions carrying blaCTX-M-15 on conjugative IncF plasmids from Escherichia coli.

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progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

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Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2.

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Pathogenomics of the virulence plasmids of Escherichia coli.

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Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

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Complete nucleotide sequences of plasmids pEK204, pEK499, and pEK516, encoding CTX-M enzymes in three major Escherichia coli lineages from the United Kingdom, all belonging to the international O25:H4-ST131 clone

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The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model

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7 July 2018

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Absence of CTX-M enzymes but high prevalence of clones, including clone ST131, among fecal Escherichia coli isolates from healthy subjects living in the area of Paris, France

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Dissemination of clonally related Escherichia coli strains expressing extended-spectrum beta-lactamase CTX-M-15.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Bacterial pathogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Rapid dissemination and diversity of CTX-M extended-spectrum beta-lactamase genes in commensal Escherichia coli isolates from healthy children from low-resource settings in Latin America.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Plasmid replicon typing of commensal and pathogenic Escherichia coli isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Sex and virulence in Escherichia coli: an evolutionary perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Genome trees from conservation profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum beta-lactamase involved in an outbreak in long-term-care facilities in Toronto, Canada

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

APE: Analyses of Phylogenetics and Evolution in R language

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Characterisation and distribution of a cryptic Salmonella typhi plasmid pHCM2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Mosaic plasmids and mosaic replicons: evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

The genomic tree as revealed from whole proteome comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Replication and control of circular bacterial plasmids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Evolution of enterohemorrhagic Escherichia coli hemolysin plasmids and the locus for enterocyte effacement in shiga toxin-producing E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Gene amplification in cultured animal cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Identification and classification of bacterial plasmids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Nucleotide sequence of the R721 shufflon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

7 July 2018

Identification of plasmids by PCR-based replicon typing.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Characterization of plasmids harbouring qnrS1, qnrB2 and qnrB19 genes in Salmonella

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Globally disseminated human pathogenic Escherichia coli of O25b-ST131 clone, harbouring blaCTX-M-15 , found in Glaucous-winged gull at remote Commander Islands, Russia.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

National survey of Escherichia coli causing extraintestinal infections reveals the spread of drug-resistant clonal groups O25b:H4-B2-ST131, O15:H1-D-ST393 and CGA-D-ST69 with high virulence gene content in Spain

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Virulence characteristics and phylogenetic background of multidrug-resistant and antimicrobial-susceptible clinical isolates of Escherichia coli from across the United States, 2000-2001.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Molecular epidemiology of Escherichia coli sequence type 131 and Its H30 and H30-Rx subclones among extended-spectrum-β-lactamase-positive and -negative E. coli clinical isolates from the Chicago Region, 2007 to 2010.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

The large plasmids of Shiga-toxin-producing Escherichia coli (STEC) are highly variable genetic elements

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Molecular epidemiology of Escherichia coli producing extended-spectrum {beta}-lactamases in Lugo (Spain): dissemination of clone O25b:H4-ST131 producing CTX-M-15.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Spread of bla(CTX-M-14) is driven mainly by IncK plasmids disseminated among Escherichia coli phylogroups A, B1, and D in Spain.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Transfer of an Escherichia coli ST131 multiresistance cassette has created a Klebsiella pneumoniae-specific plasmid associated with a major nosocomial outbreak.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

A novel IS26 structure surrounds blaCTX-M genes in different plasmids from German clinical Escherichia coli isolates.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Prevalence of day-care centre children (France) with faecal CTX-M-producing Escherichia coli comprising O25b:H4 and O16:H5 ST131 strains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

26 October 2018

Complete Genome Sequence of the Epidemic and Highly Virulent CTX-M-15-Producing H30-Rx Subclone of Escherichia coli ST131.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4270462

26 October 2018

Spread of Escherichia coli O25b:H4-B2-ST131 producing CTX-M-15 and SHV-12 with high virulence gene content in Barcelona (Spain)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004766

21 January 2018

Emergence of new variants of ST131 clonal group among extraintestinal pathogenic Escherichia coli producing extended-spectrum β-lactamases

1 reference

https://pubmed.ncbi.nlm.nih.gov/25522143

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multilevel population genetics in antibiotic resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/25522143

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1004766

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25522143%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25522143%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25522143%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

ResearchGate publication ID

0 references

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