(Q34743647)

4 August 2017

title

R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures (English)

1 reference

4 August 2017

1 reference

2

Anton I Petrov

1 reference

4 August 2017

Ryan R Rahrig

1

1 reference

4 August 2017

Neocles B Leontis

series ordinal

3

1 reference

4 August 2017

Craig L Zirbel

series ordinal

4

1 reference

4 August 2017

language of work or name

English

0 references

publication date

28 May 2013

1 reference

4 August 2017

published in

Nucleic Acids Research

1 reference

4 August 2017

volume

41

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4 August 2017

issue

Web Server issue

1 reference

4 August 2017

page(s)

W15-21

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Creative Commons Attribution 3.0 Unported

4 August 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Visualizing RNA base-pairing probabilities with RNAbow diagrams

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

SETTER: web server for RNA structure comparison

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

Efficient RNA pairwise structure comparison by SETTER method

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

R-CHIE: a web server and R package for visualizing RNA secondary structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

R3D Align: global pairwise alignment of RNA 3D structures using local superpositions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

iPARTS: an improved tool of pairwise alignment of RNA tertiary structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

The RNA structure alignment ontology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

Frequency and isostericity of RNA base pairs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

SARSA: a web tool for structural alignment of RNA using a structural alphabet

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

FR3D: finding local and composite recurrent structural motifs in RNA 3D structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

The ARTS web server for aligning RNA tertiary structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

Multiple sequence alignment.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

Geometric nomenclature and classification of RNA base pairs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

Modeling RNA tertiary structure from patterns of sequence variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

7 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

A general method applicable to the search for similarities in the amino acid sequence of two proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

Matching sequences under deletion-insertion constraints

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

SARA: a server for function annotation of RNA structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

RNA structure alignment by a unit-vector approach

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692076

Ribosomal RNA phylogeny and the primary lines of evolutionary descent

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23716643

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ARTS: alignment of RNA tertiary structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23716643

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT417

1 reference

4 August 2017

DBLP publication ID

journals/nar/RahrigPLZ13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 August 2017

1 reference