(Q34747021)

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Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments

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scholarly article

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Europe PubMed Central

PubMed publication ID

4 August 2017

Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

biogeochemistry

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based on heuristic

inferred from title

Taishi Tsubouchi

object named as

Taishi Tsubouchi

4

0 references

Manabu Nishizawa

object named as

Manabu Nishizawa

2

0 references

object named as

Keisuke Koba

9

0 references

5

object named as

Miho Hirai

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

author name string

Takuro Nunoura

1

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Tohru Kikuchi

3

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Osamu Koide

6

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Junichi Miyazaki

7

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Hisako Hirayama

8

1 reference

Europe PubMed Central

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4 August 2017

Ken Takai

10

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Europe PubMed Central

PubMed publication ID

4 August 2017

publication date

29 May 2013

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Europe PubMed Central

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4 August 2017

Environmental Microbiology

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Europe PubMed Central

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4 August 2017

15

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Europe PubMed Central

PubMed publication ID

4 August 2017

11

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

3087-3107

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Archaeal ammonia oxidizers and nirS-type denitrifiers dominate sediment nitrifying and denitrifying populations in a subtropical macrotidal estuary.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Molecular phylogeny of Archaea from soil.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Kinetic characterisation of an enriched Nitrospira culture with comparison to Nitrobacter.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Oxygen isotopes in nitrate: new reference materials for 18O:17O:16O measurements and observations on nitrate-water equilibration.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

N2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica.

1 reference

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21 January 2018

Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea.

1 reference

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21 January 2018

Diversity and spatial distribution of amoA-encoding archaea in the deep-sea sediments of the tropical West Pacific Continental Margin

1 reference

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21 January 2018

Diversity, abundance and distribution of amoA-encoding archaea in deep-sea methane seep sediments of the Okhotsk Sea.

1 reference

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21 January 2018

High abundance of Archaea in Antarctic marine picoplankton

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Community genomics among stratified microbial assemblages in the ocean's interior

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Microbial diversity and stratification of South Pacific abyssal marine sediments

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Nitrite oxidation in the Namibian oxygen minimum zone

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Experimental demonstration of chaotic instability in biological nitrification.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Doubling of marine dinitrogen-fixation rates based on direct measurements

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Hydrazine synthase, a unique phylomarker with which to study the presence and biodiversity of anammox bacteria

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Bacterial community shift along a subsurface geothermal water stream in a Japanese gold mine

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Oxygen sensitivity of anammox and coupled N-cycle processes in oxygen minimum zones

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Archaeal dominance in the mesopelagic zone of the Pacific Ocean

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Molecular mechanism of anaerobic ammonium oxidation.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

In situ activity and spatial organization of anaerobic ammonium-oxidizing (anammox) bacteria in biofilms

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Isolation of an autotrophic ammonia-oxidizing marine archaeon

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Anaerobic ammonium oxidation by anammox bacteria in the Black Sea.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Clustal W and Clustal X version 2.0

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

ARB: a software environment for sequence data

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Comparison of methods for quantification of cytochrome cd(1)-denitrifying bacteria in environmental marine samples

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Diversity of aerobic and anaerobic ammonia-oxidizing bacteria in marine sponges

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Distribution and diversity of archaeal and bacterial ammonia oxidizers in salt marsh sediments

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Genome sequence of "Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Quantification of mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Archaeal diversity and distribution along thermal and geochemical gradients in hydrothermal sediments at the Yonaguni Knoll IV hydrothermal field in the Southern Okinawa trough

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

First exploration of Nitrobacter diversity in soils by a PCR cloning-sequencing approach targeting functional gene nxrA.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Abundance and diversity of microbial life in ocean crust

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Anaerobic ammonium-oxidizing bacteria in marine environments: widespread occurrence but low diversity

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Environmental detection of octahaem cytochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Isolation of a multiheme protein with features of a hydrazine-oxidizing enzyme from an anaerobic ammonium-oxidizing enrichment culture

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

A bacterial method for the nitrogen isotopic analysis of nitrate in seawater and freshwater.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Uncultured archaea in deep marine subsurface sediments: have we caught them all?

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Production of N(2) through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Anaerobic Ammonium Oxidation Measured in Sediments along the Thames Estuary, United Kingdom

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Environmental genome shotgun sequencing of the Sargasso Sea

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Denitrification as the dominant nitrogen loss process in the Arabian Sea.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Bicarbonate uptake by marine Crenarchaeota

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Archaeal nitrification in the ocean

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

The significance of nitrification for oceanic new production

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Nitrogen cycling in the ocean: new perspectives on processes and paradigms

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Phylogenetic survey of metabolically active microbial communities associated with the deep-sea coral Lophelia pertusa from the Apulian plateau, Central Mediterranean Sea

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranean Sea

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Measurement of the Oxygen Isotopic Composition of Nitrate in Seawater and Freshwater Using the Denitrifier Method

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12152

21 January 2018

Identifiers

10.1111/1462-2920.12152

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

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