(Q34760657)

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Coarse-grained/molecular mechanics of the TAS2R38 bitter taste receptor: experimentally-validated detailed structural prediction of agonist binding

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scholarly article

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Europe PubMed Central

PubMed publication ID

4 August 2017

Coarse-grained/molecular mechanics of the TAS2R38 bitter taste receptor: experimentally-validated detailed structural prediction of agonist binding (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Wolfgang Meyerhof

7

object named as

Wolfgang Meyerhof

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Europe PubMed Central

PubMed publication ID

4 August 2017

6

object named as

Paolo Carloni

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Europe PubMed Central

PubMed publication ID

4 August 2017

author name string

Alessandro Marchiori

1

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Europe PubMed Central

PubMed publication ID

4 August 2017

Luciana Capece

2

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Alejandro Giorgetti

3

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Paolo Gasparini

4

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Europe PubMed Central

PubMed publication ID

4 August 2017

Maik Behrens

5

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Europe PubMed Central

PubMed publication ID

4 August 2017

language of work or name

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publication date

31 May 2013

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Europe PubMed Central

PubMed publication ID

4 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

5

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

e64675

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

copyright license

Creative Commons Attribution 4.0 International

31 May 2013

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April 2022 Public Data File from Crossref

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The human bitter taste receptor TAS2R10 is tailored to accommodate numerous diverse ligands.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Hybrid molecular mechanics/coarse-grained simulations for structural prediction of G-protein coupled receptor/ligand complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Bitter taste receptor research comes of age: from characterization to modulation of TAS2Rs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Diversity and modularity of G protein-coupled receptor structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Structural basis of activation of bitter taste receptor T2R1 and comparison with Class A G-protein-coupled receptors (GPCRs)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Predicting novel binding modes of agonists to β adrenergic receptors using all-atom molecular dynamics simulations

1 reference

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7 July 2018

Insights into the binding of Phenyltiocarbamide (PTC) agonist to its target human TAS2R38 bitter receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Characterization of the beta-D-glucopyranoside binding site of the human bitter taste receptor hTAS2R16.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Structural requirements of bitter taste receptor activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

fpocket: online tools for protein ensemble pocket detection and tracking.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

The Molecular Receptive Ranges of Human TAS2R Bitter Taste Receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Fpocket: an open source platform for ligand pocket detection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Crystal structure of squid rhodopsin

1 reference

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7 July 2018

Functions of human bitter taste receptors depend on N-glycosylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Comparative protein structure modeling using Modeller

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Gustatory expression pattern of the human TAS2R bitter receptor gene family reveals a heterogenous population of bitter responsive taste receptor cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Microseconds dynamics simulations of the outer-membrane protease T

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

PROMALS web server for accurate multiple protein sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Prediction of protein-ligand interactions. Docking and scoring: successes and gaps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

The Relationship between Chemical Constitution and Taste

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Elucidation of mammalian bitter taste

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

The molecular basis of individual differences in phenylthiocarbamide and propylthiouracil bitterness perception

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Identification of ligands for two human bitter T2R receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

PRODRG: a tool for high-throughput crystallography of protein-ligand complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Functional interaction between T2R taste receptors and G-protein alpha subunits expressed in taste receptor cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Positional cloning of the human quantitative trait locus underlying taste sensitivity to phenylthiocarbamide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

The human TAS2R16 receptor mediates bitter taste in response to beta-glucopyranosides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Crystal structure of rhodopsin: A G protein-coupled receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

A family of candidate taste receptors in human and mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

A novel family of mammalian taste receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Mapping the binding site pocket of the serotonin 5-Hydroxytryptamine2A receptor. Ser3.36(159) provides a second interaction site for the protonated amine of serotonin but not of lysergic acid diethylamide or bufotenin

1 reference

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7 July 2018

Analysis and refinement of criteria for predicting the structure and relative orientations of transmembranal helical domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669430

7 July 2018

Noninteracting local‐structure model of folding and unfolding transition in globular proteins. I. Formulation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064675

21 January 2018

3D structure prediction of TAS2R38 bitter receptors bound to agonists phenylthiocarbamide (PTC) and 6-n-propylthiouracil (PROP).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064675

21 January 2018

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064675

21 January 2018

The GROMOS Biomolecular Simulation Program Package

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064675

21 January 2018

Contrasting modes of evolution between vertebrate sweet/umami receptor genes and bitter receptor genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23741366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coarse-Grained Model of Proteins Incorporating Atomistic Detail of the Active Site

1 reference

https://pubmed.ncbi.nlm.nih.gov/23741366

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0064675

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

2013PLoSO...864675M

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

ResearchGate publication ID

0 references

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