(Q34947126)

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Influence of C-5 substituted cytosine and related nucleoside analogs on the formation of benzo[a]pyrene diol epoxide-dG adducts at CG base pairs of DNA.

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20 January 2020

Influence of C-5 substituted cytosine and related nucleoside analogs on the formation of benzo[a]pyrene diol epoxide-dG adducts at CG base pairs of DNA (English)

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20 January 2020

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George M Giambasu

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20 January 2020

Robert H.e. Hudson

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20 January 2020

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Darrin M York

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20 January 2020

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Delshanee Kotandeniya

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Kristopher Murphy

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20 January 2020

Thakshila Dissanayake

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20 January 2020

Chen Lin

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Rahul R Lad

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Filip Wojciechowski

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Shantu Amin

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Shana J Sturla

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Ryszard Jankowiak

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20 January 2020

Roger Jones

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20 January 2020

Natalia Y Tretyakova

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17 January 2011

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20 January 2020

Nucleic Acids Research

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20 January 2020

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20 January 2020

3988-4006

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20 January 2020

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Creative Commons Attribution-NonCommercial 2.5 Generic

4 October 2016

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April 2022 Public Data File from Crossref

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0 references

Density Functional Study of the Influence of C5 Cytosine Substitution in Base Pairs with Guanine

1 reference

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8 July 2018

Fluorescence and hybridization properties of peptide nucleic acid containing a substituted phenylpyrrolocytosine designed to engage Guanine with an additional H-bond

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Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

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5-methylcytosine--the fifth base of DNA: the fifth wheel on a car or a highly promising diagnostic and therapeutic target in cancer?

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8 July 2018

Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context

1 reference

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8 July 2018

Secondary structure bias in generalized Born solvent models: comparison of conformational ensembles and free energy of solvent polarization from explicit and implicit solvation

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8 July 2018

Poleta, Polzeta and Rev1 together are required for G to T transversion mutations induced by the (+)- and (-)-trans-anti-BPDE-N2-dG DNA adducts in yeast cells

1 reference

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8 July 2018

5-halogenated pyrimidine lesions within a CpG sequence context mimic 5-methylcytosine by enhancing the binding of the methyl-CpG-binding domain of methyl-CpG-binding protein 2 (MeCP2).

1 reference

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8 July 2018

Methylation of cytosine at C5 in a CpG sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-N2-guanine adduct in DNA from a minor groove alignment to intercalation with base displacement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Effects of benzo[a]pyrene-deoxyguanosine lesions on DNA methylation catalyzed by EcoRII DNA methyltransferase and on DNA cleavage effected by EcoRII restriction endonuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Metabolic activation of polycyclic aromatic hydrocarbons to carcinogens by cytochromes P450 1A1 and 1B1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Effects of base sequence context on translesion synthesis past a bulky (+)-trans-anti-B[a]P-N2-dG lesion catalyzed by the Y-family polymerase pol kappa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Tobacco smoke carcinogens, DNA damage and p53 mutations in smoking-associated cancers

1 reference

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8 July 2018

Locating nucleobase lesions within DNA sequences by MALDI-TOF mass spectral analysis of exonuclease ladders.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

15-mer DNA duplexes containing an abasic site are thermodynamically more stable with adjacent purines than with pyrimidines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Patterns of p53 G-->T transversions in lung cancers reflect the primary mutagenic signature of DNA-damage by tobacco smoke

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Error-prone lesion bypass by human DNA polymerase eta.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

p53 mutational spectra and the role of methylated CpG sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Mutation hotspots and DNA methylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

DNA methylation and silencing of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Base pair conformation-dependent excision of benzo[a]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Cytosine methylation determines hot spots of DNA damage in the human P53 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Benzo[a]pyrene diol epoxide-DNA cis adduct formation through a trans chlorohydrin intermediate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Preferential formation of benzo[a]pyrene adducts at lung cancer mutational hotspots in P53.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Refined three-dimensional solution structure of a snake cardiotoxin: analysis of the side-chain organization suggests the existence of a possible phospholipid binding site

1 reference

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8 July 2018

Sequence dependence of benzo[a]pyrene diol epoxide-DNA adduct conformer distribution: a study by laser-induced fluorescence/polyacrylamide gel electrophoresis

1 reference

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8 July 2018

Water ring structure at DNA interfaces: hydration and dynamics of DNA-anthracycline complexes

1 reference

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8 July 2018

Chloride ions catalyze the formation of cis adducts in the binding of anti-benzo[a]pyrene diol epoxide to nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

8 July 2018

Complete and tissue-independent methylation of CpG sites in the p53 gene: implications for mutations in human cancers.

1 reference

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8 July 2018

Conformational studies of the (+)-trans, (−)-trans, (+)-cis, and (−)-cis adducts of anti-benzo[a]pyrene diolepoxide to N2-dG in duplex oligonucleotides using polyacrylamide gel electrophoresis and low-temperature fluorescence spectroscopy

1 reference

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8 July 2018

Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells

1 reference

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8 July 2018

Characterization of reversible, physical binding of benzo[a]pyrene derivatives to DNA

1 reference

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8 July 2018

5-Methylcytosine, Gene Regulation, and Cancer

1 reference

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8 July 2018

Computational analysis of structural and energetic consequences of DNA methylation

1 reference

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8 July 2018

Identification of conformationally different binding sites in benzo[a]pyrene diol epoxide--DNA adducts by low-temperature fluorescence spectroscopy

1 reference

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8 July 2018

CpG-rich islands and the function of DNA methylation

1 reference

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8 July 2018

Laser spectroscopic studies of DNA adduct structure types from enantiomeric diol epoxides of benzo[a]pyrene

1 reference

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8 July 2018

DNA methylation and development

1 reference

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8 July 2018

Solution conformation of the major adduct between the carcinogen (+)-anti-benzo[a]pyrene diol epoxide and DNA

1 reference

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1 reference

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8 July 2018

1 reference

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QCRNA 1.0: a database of quantum calculations for RNA catalysis

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Stable isotope labeling-mass spectrometry analysis of methyl- and pyridyloxobutyl-guanine adducts of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone in p53-derived DNA sequences

1 reference

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Synthesis and characterization of oligonucleotides containing 5-chlorocytosine

1 reference

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26 October 2018

Formation of diastereomeric benzo[a]pyrene diol epoxide-guanine adducts in p53 gene-derived DNA sequences

1 reference

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A Highly Abbreviated Synthesis of Dibenzo[def,p]chrysene and Its 12-Methoxy Derivative, a Key Precursor for the Synthesis of the Proximate and Ultimate Carcinogens of Dibenzo[def,p]chrysene

1 reference

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26 October 2018

Supercoiled DNA promotes formation of intercalated cis-N2-deoxyguanine adducts and base-stacked trans-N2-deoxyguanine adducts by (+)-7R,8S-dihydrodiol-9S,10R-epoxy-7,8,9,10-tetra- hydrobenzo[a]pyrene.

1 reference

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26 October 2018

Endogenous 5-methylcytosine protects neighboring guanines from N7 and O6-methylation and O6-pyridyloxobutylation by the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone

1 reference

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26 October 2018

C5-methylation of cytosine in B-DNA thermodynamically and kinetically stabilizes BI.

1 reference

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26 October 2018

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1 reference

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26 October 2018

Formation of benzo[a]pyrene diol epoxide-DNA adducts at specific guanines within K-ras and p53 gene sequences: stable isotope-labeling mass spectrometry approach

1 reference

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26 October 2018

Conformational changes of a benzo[a]pyrene diol epoxide-N(2)-dG adduct induced by a 5'-flanking 5-methyl-substituted cytosine in a (Me)CG double-stranded oligonucleotide sequence context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3089471

26 October 2018

5-Methylcytosine in CpG sites and the reactivity of nearest neighboring guanines toward the carcinogen aflatoxin B1-8,9-epoxide

1 reference

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26 October 2018

Noncovalent binding of 7 beta, 8 alpha-dihydroxy-9 alpha, 10 alpha-epoxytetrahydrobenzo[a]pyrene to deoxyribonucleic acid and its catalytic effect on the hydrolysis of the diol epoxide to tetrol.

1 reference

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26 October 2018

Cytosine Methylation Enhances DNA Damage Produced by Groove Binding and Intercalating Enediynes: Studies with Esperamicins A1 and C†

1 reference

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9 December 2018

Spectral differentiation and immunoaffinity capillary electrophoresis separation of enantiomeric benzo(a)pyrene diol epoxide-derived DNA adducts

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synthesis of Fjord region diol epoxides as potential ultimate carcinogens of dibenzo[a,l]pyrene

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https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crystal structure of d(GGm5CCGGCC): the effect of methylation on A-DNA structure and stability

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https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Decay-associated emission spectra and other spectral evidence for the physical intercalation of 7,8-dihydroxy-7,8-dihydrobenzo[a]pyrene into DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A synthetic nucleoside probe that discerns a DNA adduct from unmodified DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-sequence dependence of noncovalent complex formation and reactivity of benzo[a]pyrene diol epoxide with polynucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base stacking and molecular polarizability: effect of a methyl group in the 5-position of pyrimidines

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformations of adducts and kinetics of binding to DNA of the optically pure enantiomers of anti-benzo(a)pyrene diol epoxide

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of benzo[a]pyrene diol epoxide chirality on solution conformations of DNA covalent adducts: the (-)-trans-anti-[BP]G.C adduct structure and comparison with the (+)-trans-anti-[BP]G.C enantiomer

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vitro replication of primer-templates containing benzo[a]pyrene adducts by exonuclease-deficient Escherichia coli DNA polymerase I (Klenow fragment): effect of sequence context on lesion bypass

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence distribution of acetaldehyde-derived N2-ethyl-dG adducts along duplex DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AMBER Force Field Parameters for the Naturally Occurring Modified Nucleosides in RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structures of benzo(a)pyrene–nucleic acid adducts formed in human and bovine bronchial explants

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytosine methylation can induce local distortions in the structure of duplex DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reactivity of guanine at m5CpG steps in DNA: evidence for electronic effects transmitted through the base pairs

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution conformation of the (-)-cis-anti-benzo[a]pyrenyl-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring into the helix with base displacement of the modified deoxyguanosine into the major groove

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How stereochemistry affects mutagenesis by N2-deoxyguanosine adducts of 7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene: configuration of the adduct bond is more important than those of the hydroxyl groups

1 reference

https://pubmed.ncbi.nlm.nih.gov/21245046

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKQ1341

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21245046%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21245046%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21245046%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

ResearchGate publication ID

0 references

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