(Q34974239)

5 August 2017

title

PHEPS: web-based pH-dependent Protein Electrostatics Server (English)

1 reference

5 August 2017

2

Boris P Atanasov

1 reference

5 August 2017

Alexander A Kantardjiev

series ordinal

1

object named as

Alexander A Kantardjiev

1 reference

5 August 2017

language of work or name

English

0 references

publication date

1 July 2006

1 reference

5 August 2017

published in

Nucleic Acids Research

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5 August 2017

volume

34

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5 August 2017

issue

Web Server issue

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5 August 2017

page(s)

W43-7

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PCE: web tools to compute protein continuum electrostatics

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

H++: a server for estimating pKas and adding missing hydrogens to macromolecules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

The Protein Data Bank and structural genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Studies of biomolecular conformations and conformational dynamics by mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Macromolecular electrostatics: continuum models and their growing pains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

How do lipases and esterases work: the electrostatic contribution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Protonation of the beta-lactam nitrogen is the trigger event in the catalytic action of class A beta-lactamases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Electrostatic coupling to pH-titrating sites as a source of cooperativity in protein-ligand binding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Structural origins of redox potentials in Fe-S proteins: electrostatic potentials of crystal structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Internal electrostatic potentials in bilayers: measuring and controlling dipole potentials in lipid vesicles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Prediction of pH-dependent properties of proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Classical electrostatics in biology and chemistry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Abnormally high pKa of an active-site glutamic acid residue in Bacillus circulans xylanase. The role of electrostatic interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

The interpretation of protein structures: Estimation of static accessibility

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Internal cavities and buried waters in globular proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Electrostatic potential of macromolecules measured by pKa shift of a fluorophore. 1. The 3' terminus of 16S RNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

The role of hydrogen-bonds in drug binding.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

pH-induced denaturation of proteins: a single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Numerical technique and computational procedure for isotachophoresis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Structural comparison of apomyoglobin and metaquomyoglobin: pH titration of histidines by NMR spectroscopy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Electrostatic effects in proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Mechanism of thermostabilization in a designed cold shock protein with optimized surface electrostatic interactions.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Macroscopic electrostatic models for protonation states in proteins

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Contribution of surface salt bridges to protein stability: guidelines for protein engineering

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Effect of hydrogen-bond networks in controlling reduction potentials in Desulfovibrio vulgaris (Hildenborough) cytochrome C3 probed by site-specific mutagenesis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

GRASS: a server for the graphical representation and analysis of structures

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Electrostatic effects in macromolecules: fundamental concepts and practical modeling

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Computational method for relative binding energies of enzyme-substrate complexes

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Internal stark effect measurement of the electric field at the amino terminus of an alpha helix

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Role of Ca2+in the Electrostatic Stability and the Functional Activity of the Globular Domain of Human C1q†

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538834

Effect of active site residues in barnase on activity and stability

9 December 2018

1 reference

12 December 2020

Ionization of tyrosine residues in human serum albumin and in its complexes with bilirubin and laurate

1 reference

12 December 2020

Potentiometric titration studies on globular proteins

1 reference

12 December 2020

High resolution NMR studies of histidine-substituted and histidine-perturbed hemoglobin variants. Histidine assignments, electrostatic interactions at the protein surface, and implications for hemoglobin S polymerization

1 reference

12 December 2020

Calculation of electrostatic interactions in proteins

1 reference

12 December 2020

Specific interactions of the allosteric effector 2,3-bisphosphoglycerate with human hemoglobin--a difference FTIR study

1 reference

12 December 2020

Structural origins of pH and ionic strength effects on protein stability. Acid denaturation of sperm whale apomyoglobin

1 reference

12 December 2020

Analysis of electrostatic interactions in ribonuclease A monoclinic crystal

1 reference

12 December 2020

Thermodynamic study of the acid denaturation of barnase and its dependence on ionic strength: evidence for residual electrostatic interactions in the acid/thermally denatured state

1 reference

12 December 2020

Engineering surface charges in a subtilisin: the effects on electrophoretic and ion-exchange behaviour

1 reference

12 December 2020

Functions of electrostatic potentials and conserved distal and proximal His-Asp H-bonding networks in haem peroxidases

1 reference

12 December 2020

A simple algorithm for the calculation of multiple site titration curves

1 reference

12 December 2020

Characterization of pyridoxal phosphate as an optical label for measuring electrostatic potentials in proteins

1 reference

12 December 2020

Local electrostatic potentials in pyridoxal phosphate labelled horse heart cytochrome c

1 reference

12 December 2020

Protein stability and electrostatic interactions between solvent exposed charged side chains

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL165

1 reference

journals/nar/KantardjievA06

5 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 August 2017

1 reference