(Q35016324)

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Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Cicer arietinum

object named as

Cicer arietinum

1 reference

based on heuristic

inferred from title

Vitantonio Pantaleo

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Walter Pirovano

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Laura Miozzi

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Marten Boetzer

3

1 reference

Europe PubMed Central

PMC publication ID

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29 February 2020

publication date

1 January 2014

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Europe PubMed Central

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29 February 2020

Frontiers in Microbiology

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

5

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

790

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

describes a project that uses

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context

1 reference

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1 reference

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8 July 2018

Plant virus metagenomics: what we know and why we need to know more

1 reference

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8 July 2018

Current impact and future directions of high throughput sequencing in plant virus diagnostics.

1 reference

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8 July 2018

De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs

1 reference

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8 July 2018

Historical perspective, development and applications of next-generation sequencing in plant virology

1 reference

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8 July 2018

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1 reference

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8 July 2018

Ray Meta: scalable de novo metagenome assembly and profiling.

1 reference

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8 July 2018

Plant virus metagenomics: biodiversity and ecology

1 reference

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8 July 2018

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

1 reference

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8 July 2018

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1 reference

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8 July 2018

Viral quasispecies evolution

1 reference

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8 July 2018

Reducing ligation bias of small RNAs in libraries for next generation sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Metagenomics and future perspectives in virus discovery.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot gris

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Integrative analysis of environmental sequences using MEGAN4

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Integrative genomics viewer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Structural and functional analysis of viral siRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection

1 reference

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8 July 2018

Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

The sequence and de novo assembly of the giant panda genome

1 reference

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8 July 2018

RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Roles of plant small RNAs in biotic stress responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Application of 'next-generation' sequencing technologies to microbial genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

RNA-based viral immunity initiated by the Dicer family of host immune receptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

1 reference

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8 July 2018

Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

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1 reference

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8 July 2018

Molecular bases of viral RNA targeting by viral small interfering RNA-programmed RISC.

1 reference

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8 July 2018

A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

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1 reference

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1 reference

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1 reference

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Eleven new sequence variants of citrus exocortis viroid and the correlation of sequence with pathogenicity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4307218

8 July 2018

Basic local alignment search tool

1 reference

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8 July 2018

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1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00790

21 January 2018

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1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00790

21 January 2018

The complete genome sequences of a Peruvian and a Colombian isolate of Andean potato latent virus and partial sequences of further isolates suggest the existence of two distinct potato-infecting tymovirus species

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00790

21 January 2018

Cymbidium ringspot virus harnesses RNA silencing to control the accumulation of virus parasite satellite RNA.

1 reference

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21 January 2018

Environmental viruses from biodiversity to ecology

1 reference

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21 January 2018

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1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00790

21 January 2018

Viral induction and suppression of RNA silencing in plants.

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00790

21 January 2018

Compromised virus-induced gene silencing in RDR6-deficient plants

1 reference

https://api.crossref.org/works/10.3389%2FFMICB.2014.00790

21 January 2018

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1 reference

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21 January 2018

Identifiers

10.3389/FMICB.2014.00790

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25674078%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

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