(Q35020492)

5 August 2017

title

Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines (English)

1 reference

5 August 2017

Joseph W Foley

1

0 references

author name string

Arend Sidow

series ordinal

2

1 reference

5 August 2017

language of work or name

English

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publication date

20 October 2013

1 reference

5 August 2017

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5 August 2017

volume

14

1 reference

5 August 2017

page(s)

720

1 reference

describes a project that uses

5 August 2017

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

8 July 2018

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Differential expression analysis for sequence count data

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Transcription factor Mef2c is required for B cell proliferation and survival after antigen receptor stimulation

8 July 2018

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Cohesin mediates transcriptional insulation by CCCTC-binding factor

8 July 2018

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8 July 2018

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Pax5: the guardian of B cell identity and function

8 July 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

8 July 2018

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Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters

8 July 2018

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Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster

8 July 2018

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8 July 2018

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A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

8 July 2018

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MTA3 and the Mi-2/NuRD complex regulate cell fate during B lymphocyte differentiation

8 July 2018

1 reference

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JunD regulates lymphocyte proliferation and T helper cell cytokine expression

8 July 2018

1 reference

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Runx3 and Runx1 are required for CD8 T cell development during thymopoiesis

8 July 2018

1 reference

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Bcl11a is essential for normal lymphoid development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Clast5/Stra13 is a negative regulator of B lymphocyte activation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Distinct roles of Jun : Fos and Jun : ATF dimers in oncogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Interaction between the two ubiquitously expressed transcription factors NF-Y and Sp1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Ras regulates the association of serum response factor and CCAAT/enhancer-binding protein beta

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

STAT5 interaction with the T cell receptor complex and stimulation of T cell proliferation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Characterization of myocyte enhancer factor 2 (MEF2) expression in B and T cells: MEF2C is a B cell-restricted transcription factor in lymphocytes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Stat3 activation is responsible for IL-6-dependent T cell proliferation through preventing apoptosis: generation and characterization of T cell-specific Stat3-deficient mice.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Combining evidence using p-values: application to sequence homology searches

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Role of PML in cell growth and the retinoic acid pathway

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Molecular characterization of the novel basic helix-loop-helix protein DEC1 expressed in differentiated human embryo chondrocytes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Regulation of the cfos serum response element by C/EBPbeta

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Targeted disruption of the PU.1 gene results in multiple hematopoietic abnormalities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Identification of potential target genes for the neuron-restrictive silencer factor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

B-lymphocyte development is regulated by the combined dosage of three basic helix-loop-helix genes, E2A, E2-2, and HEB.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Late induction of CREB/ATF binding and a concomitant increase in cAMP levels in T and B lymphocytes stimulated via the antigen receptor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Mxi1, a protein that specifically interacts with Max to bind Myc-Max recognition sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

BCL3 encodes a nuclear protein which can alter the subcellular location of NF-kappa B proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Regulation of transcription by dimerization of erythroid factor NF-E2 p45 with small Maf proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

E2A proteins are required for proper B cell development and initiation of immunoglobulin gene rearrangements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Mad-Max transcriptional repression is mediated by ternary complex formation with mammalian homologs of yeast repressor Sin3

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Oct-2 is required early in T cell-independent B cell activation for G1 progression and for proliferation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

The neighbor-joining method: a new method for reconstructing phylogenetic trees

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

A yeast and a human CCAAT-binding protein have heterologous subunits that are functionally interchangeable

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Max: a helix-loop-helix zipper protein that forms a sequence-specific DNA-binding complex with Myc

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

A novel lineage-specific nuclear factor regulates mb-1 gene transcription at the early stages of B cell differentiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Co-evolution from yeast to mouse: cDNA cloning of the two NF-Y (CP-1/CBF) subunits

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

Members of the USF family of helix-loop-helix proteins bind DNA as homo- as well as heterodimers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

HEB, a Helix-Loop-Helix Protein Related to E2A and ITF2 That Can Modulate the DNA-Binding Ability of Myogenic Regulatory Factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

An integrated encyclopedia of DNA elements in the human genome

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-720

REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis.

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2164-14-720

Transcription factor IRF4 controls plasma cell differentiation and class-switch recombination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-720

Disruption of Rxra gene in thymocytes and T lymphocytes modestly alters lymphocyte frequencies, proliferation, survival and T helper type 1/type 2 balance

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-720

Essential role for Bclaf1 in lung development and immune system function.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826616

NFATc1 and NFATc2 together control both T and B cell activation and differentiation

25 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24138567

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-720

1 reference

5 August 2017

1 reference

5 August 2017

1 reference