(Q35038272)

5 August 2017

title

Deep sequencing of large library selections allows computational discovery of diverse sets of zinc fingers that bind common targets (English)

1 reference

5 August 2017

Anton V Persikov

1

1 reference

5 August 2017

Elizabeth F Rowland

2

1 reference

5 August 2017

Benjamin L Oakes

3

1 reference

5 August 2017

Mona Singh

4

1 reference

5 August 2017

Marcus B Noyes

5

1 reference

5 August 2017

language of work or name

English

0 references

publication date

7 November 2013

1 reference

5 August 2017

published in

Nucleic Acids Research

1 reference

5 August 2017

volume

42

1 reference

5 August 2017

issue

3

1 reference

5 August 2017

page(s)

1497-1508

1 reference

Creative Commons Attribution 3.0 Unported

5 August 2017

copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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8 July 2018

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Evaluation and application of modularly assembled zinc-finger nucleases in zebrafish

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays

8 July 2018

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8 July 2018

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Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences

8 July 2018

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The discovery of zinc fingers and their development for practical applications in gene regulation and genome manipulation

8 July 2018

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8 July 2018

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Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases

8 July 2018

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Diversity and complexity in DNA recognition by transcription factors

8 July 2018

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8 July 2018

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Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases.

8 July 2018

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Predicting DNA recognition by Cys2His2 zinc finger proteins

8 July 2018

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Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification

8 July 2018

1 reference

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Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites

8 July 2018

1 reference

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Specific DNA-binding by apicomplexan AP2 transcription factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases

8 July 2018

1 reference

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Unexpected failure rates for modular assembly of engineered zinc fingers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system

8 July 2018

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8 July 2018

1 reference

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8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Development of zinc finger domains for recognition of the 5'-CNN-3' family DNA sequences and their use in the construction of artificial transcription factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Ab initio prediction of transcription factor targets using structural knowledge

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Highly efficient endogenous human gene correction using designed zinc-finger nucleases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Site-selective in vivo targeting of cytosine-5 DNA methylation by zinc-finger proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Zinc-finger protein-targeted gene regulation: genomewide single-gene specificity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Human zinc fingers as building blocks in the construction of artificial transcription factors.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Structural characterization of the human proteome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

A rapid, generally applicable method to engineer zinc fingers illustrated by targeting the HIV-1 promoter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

DNA recognition by Cys2His2 zinc finger proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Synergy between adjacent zinc fingers in sequence-specific DNA recognition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Sequence logos: a new way to display consensus sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Amino acid substitution matrices from protein blocks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Gene-specific targeting of H3K9 methylation is sufficient for initiating repression in vivo.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Probabilistic code for DNA recognition by proteins of the EGR family.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Validated zinc finger protein designs for all 16 GNN DNA triplet targets

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Phage display methods for selecting zinc finger proteins with novel DNA-binding specificities

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3919609

Analysis of specific protein-DNA interactions by bacterial one-hybrid assay

25 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24214968

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Expressing the human genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24214968

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT1034

1 reference

release_rqsmw66ud5aenaw32l54xme7jm

5 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rqsmw66ud5aenaw32l54xme7jm

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3919609

1 reference

5 August 2017

1 reference