(Q35042433)

6 August 2017

title

Criteria for the use of omics-based predictors in clinical trials: explanation and elaboration (English)

1 reference

6 August 2017

7

Jill P Mesirov

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6 August 2017

Lisa M McShane

1

1 reference

6 August 2017

Margaret M Cavenagh

2

1 reference

6 August 2017

Tracy G Lively

3

1 reference

6 August 2017

David A Eberhard

4

1 reference

6 August 2017

William L Bigbee

5

1 reference

6 August 2017

P Mickey Williams

6

1 reference

6 August 2017

Mei-Yin C Polley

8

1 reference

6 August 2017

Kelly Y Kim

9

1 reference

6 August 2017

James V Tricoli

10

1 reference

6 August 2017

Jeremy M G Taylor

11

1 reference

6 August 2017

Deborah J Shuman

12

1 reference

6 August 2017

Richard M Simon

13

1 reference

6 August 2017

James H Doroshow

14

1 reference

6 August 2017

Barbara A Conley

15

1 reference

6 August 2017

language of work or name

English

0 references

publication date

17 October 2013

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6 August 2017

1 reference

6 August 2017

volume

11

1 reference

6 August 2017

issue

1

0 references

page(s)

220

1 reference

https://scigraph.springernature.com/pub.10.1186/1741-7015-11-220

6 August 2017

exact match

0 references

cites work

Criteria for the use of omics-based predictors in clinical trials

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8 July 2018

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Randomized phase II trial designs with biomarkers

8 July 2018

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Development and use of integral assays in clinical trials

8 July 2018

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Leveling the playing field: bringing development of biomarkers and molecular diagnostics up to the standards for drug development

8 July 2018

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Risk prediction models: II. External validation, model updating, and impact assessment

8 July 2018

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Risk prediction models: I. Development, internal validation, and assessing the incremental value of a new (bio)marker

8 July 2018

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Needle core biopsies provide ample material for genomic and proteomic studies of kidney cancer: observations on DNA, RNA, protein extractions and VHL mutation detection

8 July 2018

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Improving validation practices in "omics" research

8 July 2018

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Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)

8 July 2018

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Synthetic spike-in standards for RNA-seq experiments

8 July 2018

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Optimally splitting cases for training and testing high dimensional classifiers

8 July 2018

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Strengthening the reporting of Genetic RIsk Prediction Studies: the GRIPS Statement

8 July 2018

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Statistical issues in quality control of proteomic analyses: good experimental design and planning

8 July 2018

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Tissue is alive: New technologies are needed to address the problems of protein biomarker pre-analytical variability

8 July 2018

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Tackling the widespread and critical impact of batch effects in high-throughput data

8 July 2018

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The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

8 July 2018

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Gene expression-based prognostic signatures in lung cancer: ready for clinical use?

8 July 2018

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Frozen robust multiarray analysis (fRMA).

8 July 2018

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Computer science. Accessible reproducible research

8 July 2018

1 reference

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Randomized clinical trials with biomarkers: design issues

8 July 2018

1 reference

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Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

8 July 2018

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Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

8 July 2018

1 reference

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Use of archived specimens in evaluation of prognostic and predictive biomarkers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Approaching clinical proteomics: current state and future fields of application in fluid proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Effective incorporation of biomarkers into phase II trials

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Supervised risk predictor of breast cancer based on intrinsic subtypes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

High Dimensional Classification Using Features Annealed Independence Rules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Trial assessing individualized options for treatment for breast cancer: the TAILORx trial

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Validation of biomarker-based risk prediction models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Statistical challenges in preprocessing in microarray experiments in cancer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Effects of blood collection conditions on ovarian cancer serum markers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Challenges in projecting clustering results across gene expression-profiling datasets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Quantitative mass spectrometry in proteomics: a critical review

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

RNA quality in frozen breast cancer samples and the influence on gene expression analysis--a comparison of three evaluation methods using microcapillary electrophoresis traces

8 July 2018

1 reference

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Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

A population-based study of tumor gene expression and risk of breast cancer death among lymph node-negative patients

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Proposed methods for testing and selecting the ERCC external RNA controls

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Prediction error estimation: a comparison of resampling methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Clinical trial designs for predictive marker validation in cancer treatment trials

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Limitations of the odds ratio in gauging the performance of a diagnostic, prognostic, or screening marker

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Summaries of Affymetrix GeneChip probe level data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

The STARD statement for reporting studies of diagnostic accuracy: explanation and elaboration

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Effect of fixatives and tissue processing on the content and integrity of nucleic acids

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Selection bias in gene extraction on the basis of microarray gene-expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Molecular portraits of human breast tumours

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Biospecimen reporting for improved study quality (BRISQ)

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7015-11-220

A proteomics performance standard to support measurement quality in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7015-11-220

Cancer: Missing the mark.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7015-11-220

Ovarian cancer early detection claims are biased.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7015-11-220

Sampling-Based Approaches to Calculating Marginal Densities

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7015-11-220

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7015-11-220

Reporting recommendations for tumor marker prognostic studies (REMARK).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7015-11-220

Towards complete and accurate reporting of studies of diagnostic accuracy: The STARD Initiative.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7015-11-220

ICH harmonized tripartite guideline: Guideline for Good Clinical Practice.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852338

Reporting recommendations for tumor marker prognostic studies (REMARK): explanation and elaboration

25 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24228635

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The importance of test positive predictive value in ovarian cancer screening

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24228635

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

TAILORx: trial assigning individualized options for treatment (Rx)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24228635

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1741-7015-11-220

1 reference

Dimensions Publication ID

6 August 2017

0 references

1 reference

6 August 2017

1 reference