(Q35062020)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

The role of Dichaete in transcriptional regulation during Drosophila embryonic development (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

author name string

Jelena Aleksic

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Bettina Fischer

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Shih Pei Shen

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Steven Russell

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

language of work or name

English

0 references

publication date

8 December 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

volume

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

page(s)

861

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

2 March 2020

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3866562

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Characterization of enhancers active in the mouse embryonic cerebral cortex suggests Sox/Pou cis-regulatory logics and heterogeneity of cortical progenitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Genome-wide quantitative enhancer activity maps identified by STARR-seq

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Identifying targets of the Sox domain protein Dichaete in the Drosophila CNS via targeted expression of dominant negative proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

A GAL4-driver line resource for Drosophila neurobiology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

A resource for manipulating gene expression and analyzing cis-regulatory modules in the Drosophila CNS.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

HOT DNAs: a novel class of developmental enhancers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Drosophila melanogaster Zelda and Single-minded collaborate to regulate an evolutionarily dynamic CNS midline cell enhancer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Sequentially acting Sox transcription factors in neural lineage development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Temporal coordination of gene networks by Zelda in the early Drosophila embryo.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

B1 and B2 Sox gene expression during neural plate development in chicken and mouse embryos: universal versus species-dependent features

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

STAT is an essential activator of the zygotic genome in the early Drosophila embryo.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

A cis-regulatory map of the Drosophila genome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Parallel expansions of Sox transcription factor group B predating the diversifications of the arthropods and jawed vertebrates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Interaction of Sox1, Sox2, Sox3 and Oct4 during primary neurogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

On the use of resampling tests for evaluating statistical significance of binding-site co-occurrence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

BEDTools: a flexible suite of utilities for comparing genomic features

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Neural stem cell transcriptional networks highlight genes essential for nervous system development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Sox2 roles in neural stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Evolution of the insect Sox genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

FlyMine: an integrated database for Drosophila and Anopheles genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Detection of in vivo protein-DNA interactions using DamID in mammalian cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Linking pattern formation to cell-type specification: Dichaete and Ind directly repress achaete gene expression in the Drosophila CNS.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

From stem cells to neurons and glia: a Soxist's view of neural development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Conserved genomic organisation of Group B Sox genes in insects

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Interplay of SOX and POU factors in regulation of the Nestin gene in neural primordial cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Vertebrate neurogenesis is counteracted by Sox1-3 activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

SOX2 functions to maintain neural progenitor identity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Multipotent cell lineages in early mouse development depend on SOX2 function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Evidence for differential and redundant function of the Sox genes Dichaete and SoxN during CNS development in Drosophila.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

It takes guts: the Drosophila hindgut as a model system for organogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

At the nexus between pattern formation and cell-type specification: the generation of individual neuroblast fates in the Drosophila embryonic central nervous system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Gene regulatory functions of Drosophila fish-hook, a high mobility group domain Sox protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Synergistic activation of the fibroblast growth factor 4 enhancer by Sox2 and Oct-3 depends on protein-protein interactions facilitated by a specific spatial arrangement of factor binding sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

The Dichaete gene of Drosophila melanogaster encodes a SOX-domain protein required for embryonic segmentation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

The Drosophila fish-hook gene encodes a HMG domain protein essential for segmentation and CNS development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

A comparison of the properties of Sox-3 with Sry and two related genes, Sox-1 and Sox-2

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Two distinct subgroups of Group B Sox genes for transcriptional activators and repressors: their expression during embryonic organogenesis of the chicken

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

Genome-wide analysis of Sox genes in Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

The Drosophila HMG-domain proteins SoxNeuro and Dichaete direct trichome formation via the activation of shavenbaby and the restriction of Wingless pathway activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

Sox neuro, a new Drosophila Sox gene expressed in the developing central nervous system

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

The Tom channel in the mitochondrial outer membrane: alive and kicking

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

The HMG-box transcription factor SoxNeuro acts with Tcf to control Wg/Wnt signaling activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

Temporal transcription factors and their targets schedule the end of neural proliferation in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

Regulation of temporal identity transitions in Drosophila neuroblasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

Impact of normalization on miRNA microarray expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

CNS midline enhancers of the Drosophila slit and Toll genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

Replacement of mouse Sox10 by the Drosophila ortholog Sox100B provides evidence for co-option of SoxE proteins into vertebrate-specific gene-regulatory networks through altered expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

RSAT 2011: regulatory sequence analysis tools.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

Formation of neuroblasts in the embryonic central nervous system of Drosophila melanogaster is controlled by SoxNeuro.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

The Sox-domain containing gene Dichaete/fish-hook acts in concert with vnd and ind to regulate cell fate in the Drosophila neuroectoderm.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Drosophila neuroblasts sequentially express transcription factors which specify the temporal identity of their neuronal progeny

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Functional interactions between Drosophila bHLH/PAS, Sox, and POU transcription factors regulate CNS midline expression of the slit gene.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

A Drosophila group E Sox gene is dynamically expressed in the embryonic alimentary canal

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Regulatory mutations of the Drosophila Sox gene Dichaete reveal new functions in embryonic brain and hindgut development

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

The Drosophila SOX-domain protein Dichaete is required for the development of the central nervous system midline.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3866562

Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition

27 September 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-861

Disturbed balance between SOX2 and CDX2 in human vitelline duct anomalies and intestinal duplications

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24314314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Network biology: why do we need hubs?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24314314

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-861

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

PubMed publication ID

24314314

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24314314%20AND%20SRC:MED&resulttype=core&format=json