(Q35089205)

6 August 2017

title

Kassiopeia: a database and web application for the analysis of mutually exclusive exomes of eukaryotes (English)

1 reference

6 August 2017

1 reference

1

Klas Hatje

1 reference

6 August 2017

Martin Kollmar

2

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6 August 2017

language of work or name

English

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publication date

10 February 2014

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6 August 2017

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6 August 2017

volume

15

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6 August 2017

page(s)

115

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WebScipio: Reconstructing alternative splice variants of eukaryotic proteins

6 August 2017

cites work

1 reference

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8 July 2018

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8 July 2018

ViennaRNA Package 2.0

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Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio

8 July 2018

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Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology

8 July 2018

1 reference

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RNA structure and the mechanisms of alternative splicing.

8 July 2018

1 reference

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Regulation of the mutually exclusive exons 8a and 8 in the CaV1.2 calcium channel transcript by polypyrimidine tract-binding protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

The developmental transcriptome of Drosophila melanogaster

8 July 2018

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Genome-wide analysis of alternative splicing in Caenorhabditis elegans

8 July 2018

1 reference

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Competing RNA secondary structures are required for mutually exclusive splicing of the Dscam exon 6 cluster.

8 July 2018

1 reference

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Prediction of alternatively spliced exons using Support Vector Machines

8 July 2018

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8 July 2018

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Proteogenomics to discover the full coding content of genomes: a computational perspective

8 July 2018

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Prevalence of alternative splicing choices in Arabidopsis thaliana

8 July 2018

1 reference

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Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

8 July 2018

1 reference

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Role of RNA structure in regulating pre-mRNA splicing

8 July 2018

1 reference

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Accurate prediction of NAGNAG alternative splicing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

RNAalifold: improved consensus structure prediction for RNA alignments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Comparative genomic analysis of the arthropod muscle myosin heavy chain genes allows ancestral gene reconstruction and reveals a new type of 'partially' processed pseudogene

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

SeqAn an efficient, generic C++ library for sequence analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Evolution of genes and genomes on the Drosophila phylogeny

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Structural basis of Dscam isoform specificity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

AUGUSTUS: ab initio prediction of alternative transcripts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Understanding alternative splicing: towards a cellular code

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

MUSCLE: multiple sequence alignment with high accuracy and high throughput

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

The accuracy of ribosomal RNA comparative structure models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Protein secondary structure prediction based on position-specific scoring matrices

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Mechanistic insights into mutually exclusive splicing in dynamin 1.

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-115

Deficiency of the mitochondrial phosphate carrier presenting as myopathy and cardiomyopathy in a family with three affected children.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-115

Applying genetic programming to the prediction of alternative mRNA splice variants

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-115

Virtual genetic coding and time series analysis for alternative splicing prediction in C. elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-115

Variable window binding for mutually exclusive alternative splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-115

RNA secondary structure in mutually exclusive splicing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-115

Expansion of the mutually exclusive spliced exome in Drosophila.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923563

27 September 2018

Identifiers

DOI

10.1186/1471-2164-15-115

1 reference

6 August 2017

1 reference

6 August 2017

1 reference