(Q35092930)

6 August 2017

title

PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm (English)

1 reference

6 August 2017

Jui-Hung Hung

6

0 references

author name string

Yun-Lung Li

1

1 reference

6 August 2017

Jui-Cheng Weng

2

1 reference

6 August 2017

Chiung-Chih Hsiao

3

1 reference

6 August 2017

Min-Te Chou

4

1 reference

6 August 2017

Chin-Wen Tseng

5

1 reference

6 August 2017

publication date

21 January 2015

1 reference

6 August 2017

1 reference

6 August 2017

volume

16 Suppl 1

1 reference

6 August 2017

page(s)

S2

1 reference

AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

Trimmomatic: a flexible trimmer for Illumina sequence data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

Assessment of insert sizes and adapter content in fastq data from NexteraXT libraries

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

Prevention, diagnosis and treatment of high-throughput sequencing data pathologies

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

AdapterRemoval: easy cleaning of next-generation sequencing reads

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

Fast gapped-read alignment with Bowtie 2

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

Epigenome characterization at single base-pair resolution.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

The Sequence Alignment/Map format and SAMtools

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

TopHat: discovering splice junctions with RNA-Seq

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

ChIP-based methods for the identification of long-range chromatin interactions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

Model-based analysis of ChIP-Seq (MACS)

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

Assessing the accuracy of prediction algorithms for classification: an overview

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4331701

10.1186/1471-2105-16-S1-S2

9 July 2018

Identifiers

DOI

1 reference

6 August 2017

DBLP publication ID

journals/bmcbi/LiWHCTH15

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

6 August 2017

1 reference