(Q35097779)

6 August 2017

A New Method for Coarse-Grained Elastic Normal-Mode Analysis (English)

1 reference

6 August 2017

Mingyang Lu

1

1 reference

PubMed ID

21760758

6 August 2017

Billy Poon

series ordinal

2

1 reference

PubMed ID

21760758

6 August 2017

Jianpeng Ma

series ordinal

3

1 reference

6 August 2017

1 January 2006

1 reference

Journal of Chemical Theory and Computation

6 August 2017

1 reference

6 August 2017

2

1 reference

6 August 2017

3

1 reference

6 August 2017

464-471

1 reference

All-atom empirical potential for molecular modeling and dynamics studies of proteins

6 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Coarse-grained normal mode analysis in structural biology

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

The role of shape in determining molecular motions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

New advances in normal mode analysis of supermolecular complexes and applications to structural refinement

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Refinement of F-actin model against fiber diffraction data by long-range normal modes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Simulation of F-actin filaments of several microns

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantised elastic deformational model

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Substructure synthesis method for simulating large molecular complexes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

How to describe protein motion without amino acid sequence and atomic coordinates.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Domain movements in human fatty acid synthase by quantized elastic deformational model

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Anisotropy of fluctuation dynamics of proteins with an elastic network model

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

A dynamic model for the allosteric mechanism of GroEL

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

GroEL/GroES: structure and function of a two-stroke folding machine

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Normal modes for specific motions of macromolecules: application to the hinge-bending mode of lysozyme

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Folding of small helical proteins assisted by small-angle X-ray scattering profiles.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Global ribosome motions revealed with elastic network model

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Conformational flexibility of pyruvate dehydrogenase complexes: a computational analysis by quantized elastic deformational model

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Molecular mechanisms of chaperonin GroEL-GroES function

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Analysis of domain motions by approximate normal mode calculations.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3133770

Mega-Dalton Biomolecular Motion Captured from Electron Microscopy Reconstructions

8 December 2018

1 reference

12 December 2020

Algorithm for normal mode analysis with general internal coordinates

1 reference

12 December 2020

The hinge-bending mode in lysozyme

1 reference

12 December 2020

Structure and function in GroEL-mediated protein folding

1 reference

12 December 2020

Identifiers

DOI

10.1021/CT050307U

1 reference

6 August 2017

1 reference

6 August 2017

1 reference

PubMed ID

21760758