(Q35101983)

6 August 2017

title

Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce (English)

1 reference

6 August 2017

1 reference

Boyu Zhang

1

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6 August 2017

Daniel T Yehdego

2

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6 August 2017

Kyle L Johnson

3

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6 August 2017

Ming-Ying Leung

4

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6 August 2017

Michela Taufer

5

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6 August 2017

publication date

8 November 2013

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6 August 2017

published in

BMC Structural Biology

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6 August 2017

volume

13 Suppl 1

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6 August 2017

page(s)

S3

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Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

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9 July 2018

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IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

Cloud-scale RNA-sequencing differential expression analysis with Myrna

9 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

A 3' terminal stem-loop structure in Nodamura virus RNA2 forms an essential cis-acting signal for RNA replication

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

RNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technology

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

UNAFold: software for nucleic acid folding and hybridization

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

Viral RNA pseudoknots: versatile motifs in gene expression and replication

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

Mechanisms and enzymes involved in SARS coronavirus genome expression

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

Mfold web server for nucleic acid folding and hybridization prediction

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

Comparisons among the larger genome segments of six nodaviruses and their encoded RNA replicases.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

A dynamic programming algorithm for RNA structure prediction including pseudoknots

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

Fast algorithm for predicting the secondary structure of single-stranded RNA

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3952952

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

9 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1472-6807-13-S1-S3

An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1472-6807-13-S1-S3

A partition function algorithm for nucleic acid secondary structure including pseudoknots

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1472-6807-13-S1-S3

10.1186/1472-6807-13-S1-S3

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

6 August 2017

0 references

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6 August 2017

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