(Q35105556)

6 August 2017

1 reference

19 September 2019

Combining experiments and simulations using the maximum entropy principle (English)

1 reference

biomedical investigative technique

6 August 2017

1 reference

19 September 2019

1

0 references

Kresten Lindorff-Larsen

series ordinal

3

0 references

Jesper Ferkinghoff-Borg

series ordinal

2

object named as

Jesper Ferkinghoff-Borg

1 reference

6 August 2017

20 February 2014

1 reference

PubMed ID

24586124

PLOS Computational Biology

6 August 2017

1 February 2014

1 reference

19 September 2019

2 references

6 August 2017

19 September 2019

10

1 reference

6 August 2017

2

1 reference

6 August 2017

e1003406

1 reference

Creative Commons Attribution 4.0 International

6 August 2017

1 reference

Systematic Parametrization of Polarizable Force Fields from Quantum Chemistry Data

19 September 2019

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Inference of structure ensembles of flexible biomolecules from sparse, averaged data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Stimulus-dependent maximum entropy models of neural population codes.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Restrained-ensemble molecular dynamics simulations based on distance histograms from double electron-electron resonance spectroscopy

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

On the statistical equivalence of restrained-ensemble simulations with the maximum entropy method

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Scientific benchmarks for guiding macromolecular energy function improvement

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Modelling dynamics in protein crystal structures by ensemble refinement

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Refinement of protein structure homology models via long, all-atom molecular dynamics simulations

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Systematic validation of protein force fields against experimental data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Generative probabilistic models extend the scope of inferential structure determination

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Transmembrane helix orientation and dynamics: insights from ensemble dynamics with solid-state NMR observables

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Maximum entropy reconstructions of dynamic signaling networks from quantitative proteomics data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Optimized molecular dynamics force fields applied to the helix-coil transition of polypeptides

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Long-timescale molecular dynamics simulations of protein structure and function.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Molecular simulation as an aid to experimentalists.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Ensemble Refinement of Protein Crystal Structures: Validation and Application

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Maximum entropy reconstruction of joint phi, psi-distribution with a coil-library prior: the backbone conformation of the peptide hormone motilin in aqueous solution from phi and psi-dependent J-couplings

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Determination of conformationally heterogeneous states of proteins

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Weighting of experimental evidence in macromolecular structure determination

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Simultaneous determination of protein structure and dynamics.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Direct observation of protein solvation and discrete disorder with experimental crystallographic phases

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

On the Use of Experimental Observations to Bias Simulated Ensembles

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

A new multiscale algorithm and its application to coarse-grained peptide models for self-assembly

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Experimental parameterization of an energy function for the simulation of unfolded proteins

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Inferential structure determination.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Determination of an ensemble of structures representing the denatured state of the bovine acyl-coenzyme a binding protein

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Maximum entropy approach to the determination of solution conformation of flexible polypeptides by global conformational analysis and NMR spectroscopy--application to DNS1-c-[D-A2,bu2,Trp4,Leu5]enkephalin and DNS1-c-[D-A2bu2,Trp4,D-Leu5]enkephalin.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

A dynamic model for the structure of acyl carrier protein in solution

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3930489

Information Theory and Statistical Mechanics

27 September 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003406

A Mathematical Theory of Communication

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003406

On Information and Sufficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003406

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003406

Exploration of disorder in protein structures by X-ray restrained molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003406

Mapping Long-Range Interactions in α-Synuclein using Spin-Label NMR and Ensemble Molecular Dynamics Simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003406

Image reconstruction from incomplete and noisy data

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003406

Will molecular dynamics simulations of proteins ever reach equilibrium?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24586124

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular dynamics simulations with replica-averaged structural restraints generate structural ensembles according to the maximum entropy principle

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24586124

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003406

1 reference

journals/ploscb/BoomsmaFL14

6 August 2017

1 reference

DBLP Dataset 2021-01-02

release_qyizzzqiqfdcpii7souxygwgau

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/qyizzzqiqfdcpii7souxygwgau

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3930489

1 reference

6 August 2017

1 reference

PubMed ID

24586124