(Q35125871)

6 August 2017

title

The characteristic direction: a geometrical approach to identify differentially expressed genes (English)

1 reference

6 August 2017

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Avi Ma'ayan

7

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author name string

Neil R Clark

1

1 reference

6 August 2017

Kevin S Hu

2

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6 August 2017

Axel S Feldmann

3

1 reference

6 August 2017

Yan Kou

4

1 reference

6 August 2017

Edward Y Chen

5

1 reference

6 August 2017

Qiaonan Duan

6

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6 August 2017

publication date

21 March 2014

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6 August 2017

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6 August 2017

volume

15

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6 August 2017

page(s)

79

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describes a project that uses

6 August 2017

DESeq2

object named as

DESeq

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

object named as

Limma

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

A comparison of methods for differential expression analysis of RNA-seq data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Differential expression analysis for sequence count data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

A scaling normalization method for differential expression analysis of RNA-seq data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Microarray data analysis: from disarray to consolidation and consensus

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Handling multiple testing while interpreting microarrays with the Gene Ontology Database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Incorporation of gene-specific variability improves expression analysis using high-density DNA microarrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Learning gene functional classifications from multiple data types

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Variable selection and pattern recognition with gene expression data generated by the microarray technology.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Significance analysis of microarrays applied to the ionizing radiation response

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Gene ontology: tool for the unification of biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

28 July 2018

The Hallmarks of Cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Tumors: wounds that do not heal. Similarities between tumor stroma generation and wound healing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

STAT3 targets suggest mechanisms of aggressive tumorigenesis in diffuse large B-cell lymphoma

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Hallmarks of Cancer: The Next Generation

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

GSEA-P: a desktop application for Gene Set Enrichment Analysis.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

The prognostic role of a gene signature from tumorigenic breast-cancer cells.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Regularized linear discriminant analysis and its application in microarrays

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

DrugBank: a comprehensive resource for in silico drug discovery and exploration

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Hotelling's T2 multivariate profiling for detecting differential expression in microarrays.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Improved statistical tests for differential gene expression by shrinking variance components estimates.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Multivariate approach for selecting sets of differentially expressed genes.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4000056

Profiling Gene Expression Using Onto-Express

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-15-79

Interpretation, design, and analysis of gene array expression experiments

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24650281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The ENCODE (ENCyclopedia Of DNA Elements) Project

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24650281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24650281

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-15-79

1 reference

journals/bmcbi/ClarkHFKCDM14

6 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

6 August 2017

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