(Q35169468)

6 August 2017

title

Allostery through protein-induced DNA bubbles (English)

1 reference

6 August 2017

A R Bishop

3

1 reference

6 August 2017

4

Kim Ø Rasmussen

1 reference

6 August 2017

Joseph J Traverso

1

1 reference

6 August 2017

Valipuram S Manoranjan

series ordinal

2

1 reference

6 August 2017

Nikolaos K Voulgarakis

series ordinal

5

1 reference

6 August 2017

language of work or name

English

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publication date

12 March 2015

1 reference

6 August 2017

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6 August 2017

volume

5

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6 August 2017

page(s)

9037

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Creative Commons Attribution 4.0 International

6 August 2017

copyright license

start time

12 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

In vitro-reconstituted nucleoids can block mitochondrial DNA replication and transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Modeling spatial correlation of DNA deformation: DNA allostery in protein binding.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

mtDNA makes a U-turn for the mitochondrial nucleoid.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Probing allostery through DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Specificity and heterogeneity of terahertz radiation effect on gene expression in mouse mesenchymal stem cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

U-turn DNA bending by human mitochondrial transcription factor A.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Mammalian transcription factor A is a core component of the mitochondrial transcription machinery

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Extreme bendability of DNA less than 100 base pairs long revealed by single-molecule cyclization.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Transcriptional activation by mitochondrial transcription factor A involves preferential distortion of promoter DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Opening-closing dynamics of the mitochondrial transcription pre-initiation complex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Human mitochondrial transcription revisited: only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Allosteric modulation of DNA by small molecules

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

The flexibility of locally melted DNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

A structural model of transcription elongation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

DNA bending by small, mobile multivalent cations

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Functional analysis of DNA bending and unwinding by the high mobility group domain of LEF-1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Intercalation, DNA kinking, and the control of transcription.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

STED nanoscopy combined with optical tweezers reveals protein dynamics on densely covered DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

The mitochondrial transcription and packaging factor Tfam imposes a U-turn on mitochondrial DNA

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

A nonlinear dynamic model of DNA with a sequence-dependent stacking term

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Allostery: DNA does it, too.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Architectural role of mitochondrial transcription factor A in maintenance of human mitochondrial DNA

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Stochastic Runge-Kutta algorithms. I. White noise.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4356955

Sequencing DNA by dynamic force spectroscopy: limitations and prospects

27 September 2018

1 reference

12 December 2020

TFAM forces mtDNA to make a U-turn

1 reference

12 December 2020

Probing the mechanical unzipping of DNA

1 reference

12 December 2020

Self-diffusion of reversibly aggregating spheres

1 reference

12 December 2020

Localized single-stranded bubble mechanism for cyclization of short double helix DNA

1 reference

12 December 2020

Entropy-driven DNA denaturation

1 reference

12 December 2020

Twist- and tension-mediated elastic coupling between DNA-binding proteins

1 reference

12 December 2020

Intrinsic and force-generated cooperativity in a theory of DNA-bending proteins

1 reference

12 December 2020

Protein sliding and DNA denaturation are essential for DNA organization by human mitochondrial transcription factor A

1 reference

12 December 2020

Identifiers

DOI

10.1038/SREP09037

1 reference

6 August 2017

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6 August 2017

1 reference