(Q37255614)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23795567%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

title

Modeling spatial correlation of DNA deformation: DNA allostery in protein binding (English)

1 reference

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3 March 2020

3

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3 March 2020

author name string

Xinliang Xu

1

1 reference

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3 March 2020

Hao Ge

2

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3 March 2020

Yi Qin Gao

4

1 reference

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3 March 2020

Siyuan S Wang

5

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3 March 2020

Beng Joo Reginald Thio

6

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3 March 2020

James T Hynes

7

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3 March 2020

X Sunney Xie

8

1 reference

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3 March 2020

Jianshu Cao

9

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3 March 2020

language of work or name

English

0 references

publication date

8 July 2013

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Journal of Physical Chemistry B

3 March 2020

published in

1 reference

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3 March 2020

volume

117

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3 March 2020

issue

42

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3 March 2020

page(s)

13378-13387

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Probing allostery through DNA

3 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Sequence-dependent sliding kinetics of p53

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Origins of specificity in protein-DNA recognition.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

The emerging role of nuclear architecture in DNA repair and genome maintenance

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Visualizing one-dimensional diffusion of proteins along DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

The multifaceted mismatch-repair system

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

The yeast Pif1p helicase removes telomerase from telomeric DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

The structure of DNA in the nucleosome core

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Torsional directed walks, entropic elasticity, and DNA twist stiffness

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Entropic elasticity of lambda-phage DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

On the molecular mechanism of drug intercalation into DNA: a simulation study of the intercalation pathway, free energy, and DNA structural changes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Modeling DNA loops using the theory of elasticity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Simulation of DNA double-strand dissociation and formation during replica-exchange molecular dynamics simulations.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

DNA repair: New tales of an old tail

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

A coarse grain model for DNA.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808477

Structure and Dynamics of DNA−Dendrimer Complexation: Role of Counterions, Water, and Base Pair Sequence

3 September 2018

1 reference

12 December 2020

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

1 reference

12 December 2020

A coarse-grained model for double-helix molecules in solution: spontaneous helix formation and equilibrium properties

1 reference

12 December 2020

Modeling DNA structure, elasticity, and deformations at the base-pair level

1 reference

12 December 2020

Interaction potentials for soft and hard ellipsoids

1 reference

12 December 2020

Modeling DNA deformations

1 reference

12 December 2020

Identifiers

DOI

10.1021/JP4047243

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23795567%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23795567%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

PubMed publication ID

23795567

1 reference