Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q35174771)
Watch
English
PSAR: measuring multiple sequence alignment reliability by probabilistic sampling.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
title
PSAR: measuring multiple sequence alignment reliability by probabilistic sampling
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
main subject
sequence alignment
1 reference
based on heuristic
inferred from title
author
Jian Ma
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
author name string
Jaebum Kim
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
language of work or name
English
0 references
publication date
16 May 2011
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
volume
39
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
issue
15
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
page(s)
6359-6368
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
copyright license
Creative Commons Attribution-NonCommercial 3.0 Unported
start time
4 October 2016
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
GUIDANCE: a web server for assessing alignment confidence scores.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
An alignment confidence score capturing robustness to guide tree uncertainty
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Towards realistic benchmarks for multiple alignments of non-coding sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Detection of nonneutral substitution rates on mammalian phylogenies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Ancestral population genomics: the coalescent hidden Markov model approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Multiple alignment of DNA sequences with MAFFT
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
An overview of multiple sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
LOCAL RELIABILITY MEASURES FROM SETS OF CO-OPTIMAL MULTIPLE SEQUENCE ALIGNMENTS
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Alignment uncertainty and genomic analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Clustal W and Clustal X version 2.0
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Recent evolutions of multiple sequence alignment algorithms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Measuring the accuracy of genome-size multiple alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Computation and analysis of genomic multi-sequence alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
An algorithm for progressive multiple alignment of sequences with insertions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Aligning multiple genomic sequences with the threaded blockset aligner
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
The human genome browser at UCSC
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
The Ensembl genome database project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Evolutionary trees from DNA sequences: A maximum likelihood approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
13 July 2018
Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
27 September 2018
How well does the HoT score reflect sequence alignment accuracy?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
27 September 2018
Uncertainty in homology inferences: assessing and improving genomic sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
27 September 2018
Simultaneous alignment and annotation of cis-regulatory regions.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
27 September 2018
DNA assembly with gaps (Dawg): simulating sequence evolution.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
27 September 2018
Simultaneous statistical multiple alignment and phylogeny reconstruction.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
27 September 2018
Statistics of local multiple alignments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
27 September 2018
Statistical alignment: computational properties, homology testing and goodness-of-fit.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159474
retrieved
27 September 2018
The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21576232
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Heads or tails: a simple reliability check for multiple sequence alignments
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21576232
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Multiple sequence alignment
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21576232
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Characterization of pairwise and multiple sequence alignment errors
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21576232
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKR334
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
PMCID
3159474
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
PubMed ID
21576232
1 reference
stated in
Europe PubMed Central
PMCID
3159474
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21576232%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
ResearchGate publication ID
51130569
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit