(Q35272458)

7 August 2017

title

Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough (English)

1 reference

7 August 2017

main subject

Desulfovibrio vulgaris

object named as

Desulfovibrio vulgaris

1 reference

6

Adam P Arkin

1 reference

7 August 2017

Morgan N Price

1

1 reference

7 August 2017

Adam M Deutschbauer

2

1 reference

7 August 2017

Jennifer V Kuehl

3

1 reference

7 August 2017

Haichuan Liu

4

1 reference

7 August 2017

H Ewa Witkowska

5

1 reference

7 August 2017

language of work or name

English

0 references

publication date

12 August 2011

1 reference

7 August 2017

published in

Journal of Bacteriology

1 reference

7 August 2017

volume

193

1 reference

7 August 2017

issue

20

1 reference

7 August 2017

page(s)

5716-5727

1 reference

Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20.

7 August 2017

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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27 July 2018

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Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy

27 July 2018

1 reference

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Rho-dependent terminators and transcription termination

27 July 2018

1 reference

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Detecting transcriptionally active regions using genomic tiling arrays

27 July 2018

1 reference

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Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics.

27 July 2018

1 reference

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Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach

27 July 2018

1 reference

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Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Reduction of Chromate by Desulfovibrio vulgaris and Its c(3) Cytochrome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Prediction of transcriptional terminators in Bacillus subtilis and related species

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

A novel method for accurate operon predictions in all sequenced prokaryotes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Mauve: multiple alignment of conserved genomic sequence with rearrangements

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

WebLogo: A Sequence Logo Generator

27 July 2018

1 reference

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27 July 2018

1 reference

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27 July 2018

1 reference

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RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

27 July 2018

1 reference

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Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

CRITICA: coding region identification tool invoking comparative analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Control site location and transcriptional regulation in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Update on the Keio collection of Escherichia coli single-gene deletion mutants

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

The effects of selection against spurious transcription factor binding sites.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

CDD: a curated Entrez database of conserved domain alignments

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

BLAT—The BLAST-Like Alignment Tool

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Identification of protein coding regions by database similarity search

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Transcriptome Complexity in a Genome-Reduced Bacterium

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187205

Correlation between mRNA and protein abundance in Desulfovibrio vulgaris: a multiple regression to identify sources of variations

8 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21840973

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21840973

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JB.05563-11

1 reference

7 August 2017

1 reference

7 August 2017

1 reference