(Q35272932)

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Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum

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scholarly article

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Europe PubMed Central

7 August 2017

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum (English)

1 reference

Europe PubMed Central

7 August 2017

Plasmodium falciparum

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Nelle Varoquaux

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Nelle Varoquaux

3

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Evelien M. Bunnik

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Evelien M Bunnik

2

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object named as

Ferhat Ay

1

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Jean-Philippe Vert

object named as

Jean-Philippe Vert

4

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William S. Noble

5

object named as

William Stafford Noble

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Europe PubMed Central

7 August 2017

author name string

Karine G Le Roch

6

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Europe PubMed Central

7 August 2017

language of work or name

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publication date

13 November 2014

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Europe PubMed Central

7 August 2017

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Europe PubMed Central

7 August 2017

37

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Europe PubMed Central

7 August 2017

2

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Europe PubMed Central

7 August 2017

182-194

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Europe PubMed Central

7 August 2017

Architectural proteins: regulators of 3D genome organization in cell fate

1 reference

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A Plasmodium falciparum histone deacetylase regulates antigenic variation and gametocyte conversion

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Efficient CRISPR-Cas9-mediated genome editing in Plasmodium falciparum.

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Epigenetic memory takes center stage in the survival strategy of malaria parasites.

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Transcript maturation in apicomplexan parasites

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27 July 2018

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

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A transcriptional switch underlies commitment to sexual development in malaria parasites

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27 July 2018

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27 July 2018

Recruitment of PfSET2 by RNA polymerase II to variant antigen encoding loci contributes to antigenic variation in P. falciparum

1 reference

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27 July 2018

RNA in development: how ribonucleoprotein granules regulate the life cycles of pathogenic protozoa

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27 July 2018

Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum

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27 July 2018

Cohesin-mediated interactions organize chromosomal domain architecture

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27 July 2018

Genome-wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation

1 reference

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An epigenetic trap stabilizes singular olfactory receptor expression

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27 July 2018

PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum

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27 July 2018

PfSec13 is an unusual chromatin-associated nucleoporin of Plasmodium falciparum that is essential for parasite proliferation in human erythrocytes

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27 July 2018

Regulation of nucleosome dynamics by histone modifications

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27 July 2018

H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome

1 reference

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27 July 2018

Placing the Plasmodium falciparum epigenome on the map.

1 reference

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27 July 2018

An integrated encyclopedia of DNA elements in the human genome

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27 July 2018

A map of nucleosome positions in yeast at base-pair resolution

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27 July 2018

Insights into the Plasmodium falciparum schizont phospho-proteome

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27 July 2018

Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

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27 July 2018

Topological domains in mammalian genomes identified by analysis of chromatin interactions

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27 July 2018

Three-dimensional folding and functional organization principles of the Drosophila genome

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27 July 2018

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

1 reference

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The phosphoproteomes of Plasmodium falciparum and Toxoplasma gondii reveal unusual adaptations within and beyond the parasites' boundaries.

1 reference

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The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation

1 reference

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27 July 2018

Histone H3 trimethylation at lysine 36 is associated with constitutive and facultative heterochromatin

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Nucleosome positioning in Saccharomyces cerevisiae.

1 reference

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An epigenetic signature for monoallelic olfactory receptor expression

1 reference

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27 July 2018

3D nuclear architecture reveals coupled cell cycle dynamics of chromatin and nuclear pores in the malaria parasite Plasmodium falciparum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385791

27 July 2018

H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3

1 reference

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Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation

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27 July 2018

Genomics tools for unraveling chromosome architecture

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High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli

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27 July 2018

Nucleosome occupancy at transcription start sites in the human malaria parasite: a hard-wired evolution of virulence?

1 reference

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The three-dimensional architecture of Hox cluster silencing

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27 July 2018

Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum

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27 July 2018

A three-dimensional model of the yeast genome

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27 July 2018

Malaria gametocytogenesis

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27 July 2018

Histone variants--ancient wrap artists of the epigenome

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New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq

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27 July 2018

Histone deacetylases play a major role in the transcriptional regulation of the Plasmodium falciparum life cycle

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Fast and accurate long-read alignment with Burrows-Wheeler transform

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27 July 2018

Nucleosome landscape and control of transcription in the human malaria parasite

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27 July 2018

G+C content dominates intrinsic nucleosome occupancy

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27 July 2018

Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes

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27 July 2018

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

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27 July 2018

Post-translational modifications in Plasmodium: more than you think!

1 reference

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27 July 2018

Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum

1 reference

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27 July 2018

Poly(dA:dT) tracts: major determinants of nucleosome organization

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27 July 2018

Control of gene expression in Plasmodium falciparum - ten years on.

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27 July 2018

The meaning of gene positioning

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27 July 2018

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1 reference

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27 July 2018

Combinatorial patterns of histone acetylations and methylations in the human genome

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27 July 2018

Histone acetyltransferase inhibitor anacardic acid causes changes in global gene expression during in vitro Plasmodium falciparum development

1 reference

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27 July 2018

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

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27 July 2018

Nucleosome organization in the Drosophila genome.

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Malaria: progress, perils, and prospects for eradication

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27 July 2018

H2A.Z: view from the top.

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27 July 2018

5' flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites

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27 July 2018

A high-resolution atlas of nucleosome occupancy in yeast

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27 July 2018

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

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27 July 2018

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27 July 2018

Beyond the sequence: cellular organization of genome function

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27 July 2018

Epigenetic memory at malaria virulence genes

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27 July 2018

Organismal differences in post-translational modifications in histones H3 and H4.

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27 July 2018

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27 July 2018

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

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27 July 2018

A genomic code for nucleosome positioning

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27 July 2018

Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning

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27 July 2018

Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

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27 July 2018

Variant proteins of Plasmodium vivax are not clonally expressed in natural infections.

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27 July 2018

A high-resolution map of active promoters in the human genome

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27 July 2018

Antigenic variation in Plasmodium falciparum is associated with movement of var loci between subnuclear locations

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27 July 2018

Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle

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27 July 2018

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

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27 July 2018

Discovery of gene function by expression profiling of the malaria parasite life cycle

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27 July 2018

Translating the Histone Code

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27 July 2018

Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architecture

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27 July 2018

Parasite antigens on the infected red cell surface are targets for naturally acquired immunity to malaria.

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27 July 2018

The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of plasmodium falciparum-infected erythrocytes

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27 July 2018

Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385791

27 July 2018

Cloning the P. falciparum gene encoding PfEMP1, a malarial variant antigen and adherence receptor on the surface of parasitized human erythrocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385791

27 July 2018

Rapid switching to multiple antigenic and adhesive phenotypes in malaria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385791

27 July 2018

The role of chromatin in Plasmodium gene expression

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Genomics and integrated systems biology in Plasmodium falciparum: a path to malaria control and eradication

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Genome-wide mapping of DNA methylation in the human malaria parasite Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

The malaria parasite Plasmodium falciparum histones: organization, expression, and acetylation

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupy var gene promoters in the malaria parasite Plasmodium falciparum.

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum.

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

A map of the cis-regulatory sequences in the mouse genome

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Heterochromatin protein 1 secures survival and transmission of malaria parasites

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system.

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Genomic maps and comparative analysis of histone modifications in human and mouse

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

High-resolution profiling of histone methylations in the human genome

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Trilogies of histone lysine methylation as epigenetic landmarks of the eukaryotic genome

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400145

21 January 2018

Mechanisms of gene regulation in Plasmodium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385791

26 September 2018

A var gene promoter controls allelic exclusion of virulence genes in Plasmodium falciparum malaria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4385791

26 September 2018

Histone H3 acetylated at lysine 9 in promoter is associated with low nucleosome density in the vicinity of transcription start site in human cell

1 reference

https://pubmed.ncbi.nlm.nih.gov/25394267

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/BIES.201400145

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

1 reference

Europe PubMed Central

7 August 2017

ResearchGate publication ID

0 references

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