(Q33669258)

28 July 2017

title

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum (English)

1 reference

28 July 2017

main subject

Plasmodium falciparum

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0 references

Evelien M Bunnik

1

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author name string

Anton Polishko

2

1 reference

28 July 2017

Jacques Prudhomme

3

1 reference

28 July 2017

Nadia Ponts

4

1 reference

28 July 2017

Sarjeet S Gill

5

1 reference

28 July 2017

Stefano Lonardi

6

1 reference

28 July 2017

Karine G Le Roch

7

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28 July 2017

language of work or name

English

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publication date

8 May 2014

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28 July 2017

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28 July 2017

volume

15

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28 July 2017

page(s)

347

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describes a project that uses

28 July 2017

ggplot2

object named as

R package ggplot2

2 references

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4035074

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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21 June 2018

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21 June 2018

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The effect of micrococcal nuclease digestion on nucleosome positioning data

21 June 2018

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H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3

21 June 2018

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21 June 2018

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Nucleosome occupancy at transcription start sites in the human malaria parasite: a hard-wired evolution of virulence?

21 June 2018

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New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq

21 June 2018

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Nucleosome landscape and control of transcription in the human malaria parasite

21 June 2018

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Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes

21 June 2018

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21 June 2018

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Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum

21 June 2018

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21 June 2018

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Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

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21 June 2018

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Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

21 June 2018

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A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 June 2018

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Mechanisms underlying mutually exclusive expression of virulence genes by malaria parasites

21 June 2018

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Nucleosome positioning signals in genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Genome-scale identification of nucleosome positions in S. cerevisiae

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Global nucleosome occupancy in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Discovery of gene function by expression profiling of the malaria parasite life cycle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Histone mRNA expression: multiple levels of cell cycle regulation and important developmental consequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Genome sequence of the human malaria parasite Plasmodium falciparum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

FULL-malaria: a database for a full-length enriched cDNA library from human malaria parasite, Plasmodium falciparum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Artemis: sequence visualization and annotation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Chromatin Structure: A Repeating Unit of Histones and DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Sequence periodicities in chicken nucleosome core DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Human malaria parasites in continuous culture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Synchronization of Plasmodium falciparum Erythrocytic Stages in Culture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4035074

Evidence for nucleosome depletion at active regulatory regions genome-wide

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-347

Heterochromatin silencing and locus repositioning linked to regulation of virulence genes in Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-347

H2A.Z and H2B.Z double-variant nucleosomes define intergenic regions and dynamically occupy var gene promoters in the malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-347

Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-347

Complete in vitro maturation of Plasmodium falciparum gametocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-15-347

21 January 2018

Identifiers

DOI

10.1186/1471-2164-15-347

1 reference

Dimensions Publication ID

28 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-15-347

9 September 2019

1 reference

28 July 2017

1 reference