(Q34283494)

1 August 2017

title

Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast (English)

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10

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Leeat Keren

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Eilon Sharon

object named as

Eilon Sharon

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author name string

Tali Raveh-Sadka

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Michal Levo

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Uri Shabi

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Boaz Shany

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Maya Lotan-Pompan

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Danny Zeevi

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Adina Weinberger

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1 August 2017

language of work or name

English

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publication date

27 May 2012

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volume

44

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1 August 2017

issue

7

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page(s)

743-750

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Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

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cites work

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A quantitative model of transcription factor-activated gene expression

21 January 2018

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Chromatin decouples promoter threshold from dynamic range

21 January 2018

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Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.

21 January 2018

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Incorporating nucleosomes into thermodynamic models of transcription regulation

21 January 2018

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Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

21 January 2018

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Poly(dA:dT) tracts: major determinants of nucleosome organization

21 January 2018

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The DNA-encoded nucleosome organization of a eukaryotic genome

21 January 2018

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Genome-scale identification of nucleosome positions in S. cerevisiae

21 January 2018

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Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

21 January 2018

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Distinct frequency-distributions of homopolymeric DNA tracts in different genomes

21 January 2018

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Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

21 January 2018

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Domains of Tra1 important for activator recruitment and transcription coactivator functions of SAGA and NuA4 complexes.

21 January 2018

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Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters

21 January 2018

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De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis

21 January 2018

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Saturation mutagenesis of the yeast his3 regulatory site: requirements for transcriptional induction and for binding by GCN4 activator protein

21 January 2018

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High-resolution DNA-binding specificity analysis of yeast transcription factors

21 January 2018

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Genomic sequence is highly predictive of local nucleosome depletion

21 January 2018

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Collaborative competition mechanism for gene activation in vivo

21 January 2018

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Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

21 January 2018

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Predicting gene expression from sequence

21 January 2018

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Transcriptional regulation by the numbers: models.

21 January 2018

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Analysis of combinatorial cis-regulation in synthetic and genomic promoters

21 January 2018

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Predicting expression patterns from regulatory sequence in Drosophila segmentation.

21 January 2018

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An ensemble model of competitive multi-factor binding of the genome

21 January 2018

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An improved map of conserved regulatory sites for Saccharomyces cerevisiae

21 January 2018

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Noise in protein expression scales with natural protein abundance

21 January 2018

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Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

21 January 2018

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Nucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle

21 January 2018

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Control of stochasticity in eukaryotic gene expression

21 January 2018

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High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans

21 January 2018

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Saturation mutagenesis of a yeast his3 "TATA element": genetic evidence for a specific TATA-binding protein

21 January 2018

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De novo DNA synthesis using single molecule PCR.

21 January 2018

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Recursive construction of perfect DNA molecules from imperfect oligonucleotides

21 January 2018

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Processing DNA molecules as text

21 January 2018

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Stochastic protein expression in individual cells at the single molecule level

21 January 2018

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Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

21 January 2018

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12 December 2020

Gcn4 activator targets Gcn5 histone acetyltransferase to specific promoters independently of transcription

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12 December 2020

Microtiter plate transformation using the LiAc/SS carrier DNA/PEG method

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12 December 2020

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

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12 December 2020

Linking stochastic dynamics to population distribution: an analytical framework of gene expression

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12 December 2020

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

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12 December 2020

Identifiers

DOI

10.1038/NG.2305

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1 August 2017

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