(Q35281085)

7 August 2017

title

A time-calibrated, multi-locus phylogeny of piranhas and pacus (Characiformes: Serrasalmidae) and a comparison of species tree methods (English)

1 reference

7 August 2017

1 reference

Serrasalmidae

1 reference

Andrew W Thompson

1

0 references

Guillermo Ortí

object named as

Guillermo Ortí

series ordinal

4

0 references

Hernán López-Fernández

object named as

Hernán López-Fernández

series ordinal

3

0 references

author name string

Ricardo Betancur-R

series ordinal

2

1 reference

7 August 2017

publication date

28 September 2014

1 reference

Molecular Phylogenetics and Evolution

7 August 2017

number of pages

16

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

7 August 2017

volume

81

1 reference

7 August 2017

page(s)

242-257

1 reference

High-quality seed dispersal by fruit-eating fishes in Amazonian floodplain habitats

7 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Extremely long-distance seed dispersal by an overfished Amazonian frugivore

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Hemiplasy: a new term in the lexicon of phylogenetics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Naive binning improves phylogenomic analyses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Conserved genes, sampling error, and phylogenomic inference.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Relationships among characiform fishes inferred from analysis of nuclear and mitochondrial gene sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Accuracy and precision of species trees: effects of locus, individual, and base pair sampling on inference of species trees in lizards of the Liolaemus darwinii group (Squamata, Liolaemidae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Megapiranha paranensis, a new genus and species of Serrasalmidae (Characiformes, Teleostei) from the upper Miocene of Argentina

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Evolutionary Perspectives on Seed Consumption and Dispersal by Fishes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Discordance of species trees with their most likely gene trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Gene tree discordance, phylogenetic inference and the multispecies coalescent

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

BEAST: Bayesian evolutionary analysis by sampling trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Relaxed phylogenetics and dating with confidence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Is a new and general theory of molecular systematics emerging?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

High-resolution species trees without concatenation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Molecular systematics of Serrasalmidae: Deciphering the identities of piranha species and unraveling their evolutionary histories

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Mega-Bites: extreme jaw forces of living and extinct piranhas (Serrasalmidae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Seventeen new exon-primed intron-crossing polymerase chain reaction amplifiable introns in fish

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Bayesian inference of species trees from multilocus data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Reconciling gene trees of eastern North American minnows

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

What is the danger of the anomaly zone for empirical phylogenetics?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Phylogeography of the piranha genera Serrasalmus and Pygocentrus: implications for the diversification of the Neotropical ichthyofauna.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Relationships among major lineages of characid fishes (Teleostei: Ostariophysi: Characiformes), based on molecular sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

MAFFT version 5: improvement in accuracy of multiple sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Delimiting species without monophyletic gene trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

The accuracy of species tree estimation under simulation: a comparison of methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Exon-primed intron-crossing (EPIC) markers for non-model teleost fishes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Comparison of methods for species-tree inference in the sawfly genus Neodiprion (Hymenoptera: Diprionidae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

BEST: Bayesian estimation of species trees under the coalescent model.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Estimating species phylogenies using coalescence times among sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Gene Trees in Species Trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Inferring phylogeny despite incomplete lineage sorting

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Food Habits of Piranhas in the Low Llanos of Venezuela

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Microevolutionary processes generate phylogenomic discordance at ancient divergences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Patterns of nucleotide change in mitochondrial ribosomal RNA genes and the phylogeny of piranhas

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

jModelTest: phylogenetic model averaging

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Species tree inference by minimizing deep coalescences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Systematics, biogeography, and evolution of the Neotropical peacock basses Cichla (Perciformes: Cichlidae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

The Casiquiare river acts as a corridor between the Amazonas and Orinoco river basins: biogeographic analysis of the genus Cichla.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Ontogenetic diet shifts and resource partitioning among piscivorous fishes in the Venezuelan ilanos

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.06.018

10.1016/J.YMPEV.2014.06.018

7 January 2021

Identifiers

DOI

1 reference

7 August 2017

1 reference