(Q35300543)

4 April 2018

title

Genomic comparison of 93 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity (English)

1 reference

4 April 2018

author name string

Julianne H Grose

1

1 reference

4 April 2018

Garrett L Jensen

2

1 reference

4 April 2018

Sandra H Burnett

3

1 reference

4 April 2018

Donald P Breakwell

4

1 reference

4 April 2018

language of work or name

English

0 references

publication date

4 October 2014

1 reference

4 April 2018

published in

BMC Genomics

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4 April 2018

volume

15

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4 April 2018

page(s)

855

1 reference

4 April 2018

Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae

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12 July 2018

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12 July 2018

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12 July 2018

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Genome Sequences of Three Novel Bacillus cereus Bacteriophages

12 July 2018

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12 July 2018

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A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 Å resolution

12 July 2018

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Complete Genome of Bacillus megaterium Siphophage Slash

12 July 2018

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Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes

12 July 2018

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Complete Genome of Bacillus megaterium Siphophage Staley

12 July 2018

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Complete Genome of Bacillus thuringiensis Myophage Spock

12 July 2018

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Complete Genome of Bacillus pumilus Siphophage Riggi

12 July 2018

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Complete Genome of Bacillus megaterium Podophage Pony

12 July 2018

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Complete Genome of Bacillus pumilus Siphophage Glittering

12 July 2018

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Complete Genome of Bacillus pumilus Siphophage Blastoid

12 July 2018

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Complete Genome of Bacillus thuringiensis Myophage BigBertha

12 July 2018

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Phage cluster relationships identified through single gene analysis.

12 July 2018

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Phage cocktails and the future of phage therapy

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Genome sequence and analysis of a broad-host range lytic bacteriophage that infects the Bacillus cereus group

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Recent advances in bacteriophage based biosensors for food-borne pathogen detection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Tools from viruses: bacteriophage successes and beyond

12 July 2018

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Bacteriophages for detection and control of bacterial pathogens in food and food-processing environment

12 July 2018

1 reference

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Novel bacteriophages containing a genome of another bacteriophage within their genomes

12 July 2018

1 reference

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Phage recombinases and their applications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

12 July 2018

SH3 domains come of age

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Genome characteristics of a novel phage from Bacillus thuringiensis showing high similarity with phage from Bacillus cereus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Sequence and Structural Characterization of Great Salt Lake Bacteriophage CW02, a Member of the T7-Like Supergroup

12 July 2018

1 reference

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Complete genome sequence of Bacillus cereus bacteriophage PBC1

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Characterization of an endolysin, LysBPS13, from a Bacillus cereus bacteriophage

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Characterization of LysB4, an endolysin from the Bacillus cereus-infecting bacteriophage B4

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Structural evolution of the P22-like phages: comparison of Sf6 and P22 procapsid and virion architectures.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Complete genome sequence of Bacillus cereus bacteriophage BCP78

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Complete Nucleotide Sequence and Molecular Characterization of Bacillus Phage TP21 and its Relatedness to Other Phages with the Same Name

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Phamerator: a bioinformatic tool for comparative bacteriophage genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Development of phoH as a novel signature gene for assessing marine phage diversity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Global gene expression profile for swarming Bacillus cereus bacteria

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Bacillus anthracis: molecular taxonomy, population genetics, phylogeny and patho-evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Bacillus taxonomy in the genomic era finds phenotypes to be essential though often misleading

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Evolution of mosaically related tailed bacteriophage genomes seen through the lens of phage P22 virion assembly.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

The SPO1-related bacteriophages

12 July 2018

1 reference

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Moonlighting bacteriophage proteins derepress staphylococcal pathogenicity islands

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Prevalence of Bacillus anthracis-like organisms and bacteriophages in the intestinal tract of the earthworm Eisenia fetida

12 July 2018

1 reference

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Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size

12 July 2018

1 reference

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Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes

12 July 2018

1 reference

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Correlations between carbon metabolism and virulence in bacteria

12 July 2018

1 reference

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Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions

12 July 2018

1 reference

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The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of gram-positive bacteria

12 July 2018

1 reference

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Propagating the missing bacteriophages: a large bacteriophage in a new class

12 July 2018

1 reference

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Variability in tellurite resistance and the ter gene cluster among Shiga toxin-producing Escherichia coli isolated from humans, animals and food

12 July 2018

1 reference

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Detailed genomic analysis of the Wbeta and gamma phages infecting Bacillus anthracis: implications for evolution of environmental fitness and antibiotic resistance

12 July 2018

1 reference

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Kalign--an accurate and fast multiple sequence alignment algorithm

12 July 2018

1 reference

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The genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny

12 July 2018

1 reference

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The viriosphere, diversity, and genetic exchange within phage communities

12 July 2018

1 reference

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The genome of BCJA1c: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii

12 July 2018

1 reference

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GIL16, a new gram-positive tectiviral phage related to the Bacillus thuringiensis GIL01 and the Bacillus cereus pBClin15 elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

MUSCLE: multiple sequence alignment with high accuracy and high throughput

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Characterization of poly-gamma-glutamate hydrolase encoded by a bacteriophage genome: possible role in phage infection of Bacillus subtilis encapsulated with poly-gamma-glutamate.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Phage genomics: small is beautiful

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Virioplankton: Viruses in Aquatic Ecosystems

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Three Bacillus cereus bacteriophage endolysins are unrelated but reveal high homology to cell wall hydrolases from different bacilli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Two domains of superfamily I helicases may exist as separate proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Terminal proteins and short inverted terminal repeats of the small Bacillus bacteriophage genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Evidence that Bacillus subtilis bacteriophage SP02 is temperate and heteroimmune to bacteriophage phi-105.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Effect of nalidixic acid on deoxyribonucleic acid synthesis in bacteriophage SPO1-infected Bacillus subtilis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Relationship between competence for transfection and for transformation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

High abundance of viruses found in aquatic environments.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Basic local alignment search tool

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Identification of tubercle bacilli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Lytic bacteriophages: Potential interventions against enteric bacterial pathogens on produce

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Complete Genome Sequence of the Novel Phage MG-B1 Infecting Bacillus weihenstephanensis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Complete nucleotide sequence of Bacillus subtilis (natto) bacteriophage PM1, a phage associated with disruption of food production

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

The use of phage display to generate conformation-sensor recombinant antibodies

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

pGIL01, a linear tectiviral plasmid prophage originating from Bacillus thuringiensis serovar israelensis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Estimation of biologically damaging UV levels in marine surface waters with DNA and viral dosimeters

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197329

Characteristics of phage AP50, an RNA phage containing phospholipids

26 September 2018

1 reference

12 December 2020

The genome of Bacillus subtilis phage SP10: a comparative analysis with phage SPO1

1 reference

12 December 2020

Characterization of a novel temperate phage originating from a cereulide-producing Bacillus cereus strain

1 reference

12 December 2020

THE CARRIER STATE OF BACILLUS SUBTILIS INFECTED WITH THE TRANSDUCING BACTERIOPHAGE SP10

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-15-855

1 reference

4 April 2018

release_psaua2vv4regvhsmjttlcz7d2y

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/psaua2vv4regvhsmjttlcz7d2y

24 November 2022

mapped directly with Wikidata item

PMC publication ID

4197329

1 reference

4 April 2018

PubMed publication ID

25280881

1 reference

4 April 2018