(Q35522146)

8 August 2017

title

Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population (English)

1 reference

8 August 2017

main subject

horizontal gene transfer

0 references

genomics

0 references

author

Maggie C.Y. Lau Vetter

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Ramunas Stepanauskas

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Tullis C Onstott

8

0 references

author name string

Jessica M Labonté

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Erin K Field

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Dylan Chivian

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Esta Van Heerden

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

K Eric Wommack

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Thomas L Kieft

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

language of work or name

1 reference

22 April 2015

1 reference

Frontiers in Microbiology

8 August 2017

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

page(s)

349

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

11 June 2020

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

12 July 2018

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12 July 2018

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Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

12 July 2018

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Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

12 July 2018

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High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Integrative analysis of environmental sequences using MEGAN4

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Nematoda from the terrestrial deep subsurface of South Africa

12 July 2018

1 reference

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Characterization of bacterial diversity to a depth of 1500 m in the Outokumpu deep borehole, Fennoscandian Shield

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Mobile DNA and evolution in the 21st century

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Transposases are the most abundant, most ubiquitous genes in nature.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

BLAST+: architecture and applications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Shifting the genomic gold standard for the prokaryotic species definition

12 July 2018

1 reference

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Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm

12 July 2018

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12 July 2018

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12 July 2018

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Potential for horizontal gene transfer in microbial communities of the terrestrial subsurface

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

A diversity of uncharacterized reverse transcriptases in bacteria

12 July 2018

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Environmental genomics reveals a single-species ecosystem deep within Earth

12 July 2018

1 reference

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12 July 2018

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Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

12 July 2018

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12 July 2018

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Desulfotomaculum and Methanobacterium spp. dominate a 4- to 5-kilometer-deep fault

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Retrons, msDNA, and the bacterial genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

MUSCLE: multiple sequence alignment with high accuracy and high throughput

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Complete sequence and evolutionary genomic analysis of the Pseudomonas aeruginosa transposable bacteriophage D3112.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

ACLAME: a CLAssification of Mobile genetic Elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Prokaryotic evolution in light of gene transfer

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Fast algorithms for large-scale genome alignment and comparison

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Mechanisms of killing spores of Bacillus subtilis by acid, alkali and ethanol

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Archaeal diversity in waters from deep South African gold mines

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Horizontal gene transfer in prokaryotes: quantification and classification

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South African gold mine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Lateral gene transfer and the nature of bacterial innovation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

The COG database: a tool for genome-scale analysis of protein functions and evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Marine viruses and their biogeochemical and ecological effects

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Rapid microbial production of filamentous sulfur mats at hydrothermal vents

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Prokaryotes: the unseen majority

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Mechanisms for the prevention of damage to DNA in spores of Bacillus species

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Basic local alignment search tool

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Does aspartic acid racemization constrain the depth limit of the subsurface biosphere?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Comparison between geochemical and biological estimates of subsurface microbial activities.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Thermal effects on microbial composition and microbiologically induced corrosion and mineral precipitation affecting operation of a geothermal plant in a deep saline aquifer.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Microbial seed banks: the ecological and evolutionary implications of dormancy.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Lysogenic virus-host interactions predominate at deep-sea diffuse-flow hydrothermal vents

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Ecology. A starving majority deep beneath the seafloor.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

The role of conjugative transposons in spreading antibiotic resistance between bacteria that inhabit the gastrointestinal tract.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

The role of Bacteroides conjugative transposons in the dissemination of antibiotic resistance genes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4406082

Transposable Mu-like phages in Firmicutes: new instances of divergence generating retroelements

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25954269

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Viruses in granitic groundwater from 69 to 450 m depth of the Aspö hard rock laboratory, Sweden

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25954269

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25954269

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular characterization of vulnibactin biosynthesis in Vibrio vulnificus indicates the existence of an alternative siderophore

1 reference

12 April 2024

https://opencitations.net/index/api/v1/citations/10.3389/FMICB.2014.00001

Identifiers

DOI

10.3389/FMICB.2015.00349

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25954269%20AND%20SRC:MED&resulttype=core&format=json