(Q35543671)

8 August 2017

title

A systematic survey of the Cys2His2 zinc finger DNA-binding landscape (English)

1 reference

8 August 2017

Anton V Persikov

1

1 reference

8 August 2017

Joshua L Wetzel

2

1 reference

8 August 2017

Elizabeth F Rowland

3

1 reference

8 August 2017

Benjamin L Oakes

4

1 reference

8 August 2017

Denise J Xu

5

1 reference

8 August 2017

Mona Singh

6

1 reference

8 August 2017

Marcus B Noyes

7

1 reference

8 August 2017

language of work or name

English

0 references

publication date

15 January 2015

1 reference

8 August 2017

published in

Nucleic Acids Research

1 reference

8 August 2017

volume

43

1 reference

8 August 2017

issue

3

1 reference

8 August 2017

page(s)

1965-1984

1 reference

Creative Commons Attribution-NonCommercial 4.0 International

8 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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12 July 2018

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Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination

12 July 2018

1 reference

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CTCF: master weaver of the genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

A census of human transcription factors: function, expression and evolution

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Adaptive evolution in zinc finger transcription factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Predicting DNA recognition by Cys2His2 zinc finger proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

12 July 2018

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Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Unexpected failure rates for modular assembly of engineered zinc fingers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Keep your fingers off my DNA: protein-protein interactions mediated by C2H2 zinc finger domains

12 July 2018

1 reference

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Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Synthetic protein-protein interaction domains created by shuffling Cys2His2 zinc-fingers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Development of zinc finger domains for recognition of the 5'-CNN-3' family DNA sequences and their use in the construction of artificial transcription factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Ab initio prediction of transcription factor targets using structural knowledge

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Highly efficient endogenous human gene correction using designed zinc-finger nucleases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Crystal structure of a zinc-finger–RNA complex reveals two modes of molecular recognition

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Site-selective in vivo targeting of cytosine-5 DNA methylation by zinc-finger proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Cytoscape: a software environment for integrated models of biomolecular interaction networks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Insights into the molecular recognition of the 5'-GNN-3' family of DNA sequences by zinc finger domains

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

DNA recognition by Cys2His2 zinc finger proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Synergy between adjacent zinc fingers in sequence-specific DNA recognition

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

In vivo repression by a site-specific DNA-binding protein designed against an oncogenic sequence

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Sequence logos: a new way to display consensus sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Amino acid substitution matrices from protein blocks

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Evolutionary conservation pattern of zinc-finger domains of Drosophila segmentation genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

ZIFIBI: Prediction of DNA binding sites for zinc finger proteins.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Gene-specific targeting of H3K9 methylation is sufficient for initiating repression in vivo.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Probabilistic code for DNA recognition by proteins of the EGR family.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4330361

Expressing the human genome

24 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKU1395

Analysis of specific protein-DNA interactions by bacterial one-hybrid assay

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25593323

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU1395

1 reference

8 August 2017

1 reference

8 August 2017

1 reference