(Q35562902)

8 August 2017

title

Proteomic characterization of the nucleolar linker histone H1 interaction network (English)

1 reference

8 August 2017

Jessica E Prenni

7

0 references

author name string

Heather J Szerlong

1

1 reference

8 August 2017

Jacob A Herman

2

1 reference

8 August 2017

Christine M Krause

3

1 reference

8 August 2017

Jennifer G DeLuca

4

1 reference

8 August 2017

Arthur Skoultchi

5

1 reference

8 August 2017

Quinton A Winger

6

1 reference

8 August 2017

Jeffrey C Hansen

8

1 reference

8 August 2017

language of work or name

English

0 references

publication date

10 January 2015

1 reference

Journal of Molecular Biology

8 August 2017

published in

1 reference

8 August 2017

volume

427

1 reference

8 August 2017

issue

11

1 reference

8 August 2017

page(s)

2056-2071

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macroH2A1 histone variant represses rDNA transcription

8 August 2017

cites work

1 reference

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Linker histone H1.0 interacts with an extensive network of proteins found in the nucleolus

12 July 2018

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H1 linker histone promotes epigenetic silencing by regulating both DNA methylation and histone H3 methylation

12 July 2018

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Collaborating functions of BLM and DNA topoisomerase I in regulating human rDNA transcription

12 July 2018

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CK2-mediated hyperphosphorylation of topoisomerase I targets serine 506, enhances topoisomerase I-DNA binding, and increases cellular camptothecin sensitivity

12 July 2018

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Importance of the pluripotency factor LIN28 in the mammalian nucleolus during early embryonic development

12 July 2018

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Linker histone subtypes and their allelic variants

12 July 2018

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12 July 2018

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12 July 2018

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Drosophila melanogaster linker histone dH1 is required for transposon silencing and to preserve genome integrity

12 July 2018

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12 July 2018

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A new PICTure of nucleolar stress.

12 July 2018

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Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA

12 July 2018

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Lin28A and Lin28B inhibit let-7 microRNA biogenesis by distinct mechanisms.

12 July 2018

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Nucleoli: composition, function, and dynamics.

12 July 2018

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Proteomic profiling of the human T-cell nucleolus

12 July 2018

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The Nucleolus Takes Control of Protein Trafficking Under Cellular Stress

12 July 2018

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Nucleosome distribution and linker DNA: connecting nuclear function to dynamic chromatin structure

12 July 2018

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The small subunit processome in ribosome biogenesis—progress and prospects

12 July 2018

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The nucleolus under stress

12 July 2018

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Yeast pre-rRNA processing and modification occur cotranscriptionally

12 July 2018

1 reference

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Multifunctionality of the linker histones: an emerging role for protein-protein interactions

12 July 2018

1 reference

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Structure and epigenetics of nucleoli in comparison with non-nucleolar compartments

12 July 2018

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Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

12 July 2018

1 reference

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The role of UBF in regulating the structure and dynamics of transcriptionally active rDNA chromatin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Nucleolar targeting: the hub of the matter

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

FACT facilitates chromatin transcription by RNA polymerases I and III

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Linker histone H1 is essential for Drosophila development, the establishment of pericentric heterochromatin, and a normal polytene chromosome structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The Paf1 complex is required for efficient transcription elongation by RNA polymerase I

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

UBF levels determine the number of active ribosomal RNA genes in mammals

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Histone H1 and its isoforms: contribution to chromatin structure and function

12 July 2018

1 reference

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NOPdb: Nucleolar Proteome Database--2008 update

12 July 2018

1 reference

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The role of the plant nucleolus in pre-mRNA processing.

12 July 2018

1 reference

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The epigenetics of rRNA genes: from molecular to chromosome biology

12 July 2018

1 reference

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Phosphorylation by casein kinase 2 facilitates rRNA gene transcription by promoting dissociation of TIF-IA from elongating RNA polymerase I.

12 July 2018

1 reference

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The post-transcriptional steps of eukaryotic ribosome biogenesis

12 July 2018

1 reference

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siRNA and miRNA processing: new functions for Cajal bodies.

12 July 2018

1 reference

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Isolation and characterization of a novel H1.2 complex that acts as a repressor of p53-mediated transcription.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The histone H1 family: specific members, specific functions?

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Recruitment of factors linking transcription and processing of pre-rRNA to NOR chromatin is UBF-dependent and occurs independent of transcription in human cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The multifunctional nucleolus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Nucleolin is required for RNA polymerase I transcription in vivo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Drosophila ribosomal proteins are associated with linker histone H1 and suppress gene transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Determinants of histone H1 mobility and chromatin binding in living cells.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Chromatin architectural proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Nucleolus: from structure to dynamics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Flexible nets. The roles of intrinsic disorder in protein interaction networks.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Deciphering the human nucleolar proteome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

CK2 phosphorylates SSRP1 and inhibits its DNA-binding activity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Nucleolar proteome dynamics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

H1 linker histones are essential for mouse development and affect nucleosome spacing in vivo

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Functional proteomic analysis of human nucleolus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

All small nuclear RNAs (snRNAs) of the [U4/U6.U5] Tri-snRNP localize to nucleoli; Identification of the nucleolar localization element of U6 snRNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The chromatin remodeling complex NoRC targets HDAC1 to the ribosomal gene promoter and represses RNA polymerase I transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Emerging concepts of nucleolar assembly.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The nucleolar localization domain of the catalytic subunit of human telomerase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Directed proteomic analysis of the human nucleolus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

DNA looping in the RNA polymerase I enhancesome is the result of non-cooperative in-phase bending by two UBF molecules

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Transient nucleolar localization Of U6 small nuclear RNA in Xenopus Laevis oocytes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Nucleolar factors direct the 2'-O-ribose methylation and pseudouridylation of U6 spliceosomal RNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The plurifunctional nucleolus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Localization of signal recognition particle RNA in the nucleolus of mammalian cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Crystal structure of the nucleosome core particle at 2.8 A resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The physical association of casein kinase 2 with nucleolin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Location of Ribosomal DNA in the Human Chromosome Complement

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Amino acid sequence of protein B23 phosphorylation site

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Enhanced casein kinase II activity during mouse embryogenesis. Identification of a 110-kDa phosphoprotein as the major phosphorylation product in mouse embryos and Krebs II mouse ascites tumor cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The nucleolar transcription factor mUBF is phosphorylated by casein kinase II in the C-terminal hyperacidic tail which is essential for transactivation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417401

The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center

26 September 2018

1 reference

12 December 2020

Role of protein kinase CK2 phosphorylation in the molecular chaperone activity of nucleolar protein b23

1 reference

12 December 2020

Linker histones stabilize the intrinsic salt-dependent folding of nucleosomal arrays: mechanistic ramifications for higher-order chromatin folding

1 reference

12 December 2020

Efficient extraction of nucleolar proteins for interactome analyses

1 reference

12 December 2020

Nuclear domains of the RNA subunit of RNase P

1 reference

12 December 2020

10.1016/J.JMB.2015.01.001

Identifiers

DOI

1 reference

8 August 2017

1 reference

8 August 2017

1 reference