(Q35563985)

8 August 2017

Target-decoy approach and false discovery rate: when things may go wrong (English)

1 reference

8 August 2017

4

Pavel A Pevzner

1 reference

8 August 2017

2

Nuno Bandeira

1 reference

8 August 2017

Nitin Gupta

1

1 reference

PubMed ID

21953092

8 August 2017

Uri Keich

series ordinal

3

1 reference

PubMed ID

21953092

8 August 2017

language of work or name

1 reference

5 May 2011

1 reference

Journal of the American Society for Mass Spectrometry

8 August 2017

1 reference

8 August 2017

22

1 reference

8 August 2017

1111-1120

1 reference

8 August 2017

7

1 reference

https://scigraph.springernature.com/pub.10.1007/s13361-011-0139-3

8 August 2017

0 references

cites work

Comment on "Unbiased statistical analysis for multi-stage proteomic search strategies".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Data maximization by multipass analysis of protein mass spectra

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

False discovery rates of protein identifications: a strike against the two-peptide rule

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Reanalysis of Tyrannosaurus rex Mass Spectra

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Discovery and revision of Arabidopsis genes by proteogenomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Analysis and validation of proteomic data generated by tandem mass spectrometry

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

De novo peptide sequencing and identification with precision mass spectrometry

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Statistical significance for genomewide studies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

The diversity of acetylated proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Local alignment statistics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Establishing homologies in protein sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

On the statistical significance of nucleic acid similarities

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Aligning amino acid sequences: Comparison of commonly used methods

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Rapid and sensitive protein similarity searches

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220955

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

12 July 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0139-3

Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0139-3

Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0139-3

String overlaps, pattern matching, and nontransitive games

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-011-0139-3

A method for reducing the time required to match protein sequences with tandem mass spectra

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21953092

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Statistical Characterization of a 1D Random Potential Problem - with applications in score statistics of MS-based peptide sequencing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21953092

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Unbiased statistical analysis for multi-stage proteomic search strategies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21953092

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S13361-011-0139-3

1 reference

8 August 2017

1 reference

8 August 2017

1 reference

PubMed ID

21953092