(Q35575873)

8 August 2017

title

Site-specific collapse dynamics guide the formation of the cytochrome c' four-helix bundle (English)

1 reference

8 August 2017

3

Harry B Gray

1 reference

8 August 2017

Tetsunari Kimura

1

1 reference

8 August 2017

Jennifer C Lee

series ordinal

2

1 reference

8 August 2017

Jay R Winkler

series ordinal

4

1 reference

8 August 2017

language of work or name

English

0 references

publication date

19 December 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

8 August 2017

published in

1 reference

8 August 2017

volume

104

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8 August 2017

issue

1

1 reference

8 August 2017

page(s)

117-122

1 reference

Dynamics, energetics, and structure in protein folding

8 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Role of unfolded state heterogeneity and en-route ruggedness in protein folding kinetics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Molecular dimensions and their distributions in early folding intermediates

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Snapshots of cytochrome c folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Determination of the folding transition states of barnase by using PhiI-value-restrained simulations validated by double mutant PhiIJ-values

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

A funneled energy landscape for cytochrome c directly predicts the sequential folding route inferred from hydrogen exchange experiments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Early events in the folding of four-helix-bundle heme proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

A protein folding pathway with multiple folding intermediates at atomic resolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Specific collapse followed by slow hydrogen-bond formation of beta-sheet in the folding of single-chain monellin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

The protein folding 'speed limit'.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Theory of protein folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Specific non-native hydrophobic interactions in a hidden folding intermediate: implications for protein folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Contact order revisited: influence of protein size on the folding rate

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Understanding protein folding with energy landscape theory. Part II: Quantitative aspects

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Experimental identification of downhill protein folding.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Structural features of cytochrome c' folding intermediates revealed by fluorescence energy-transfer kinetics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Understanding protein folding with energy landscape theory. Part I: Basic concepts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Relationship between the native-state hydrogen exchange and folding pathways of a four-helix bundle protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Hydrophobic core packing in the SH3 domain folding transition state

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Cytochrome c' folding triggered by electron transfer: fast and slow formation of four-helix bundles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Conservation of folding pathways in evolutionarily distant globin sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

A surprising simplicity to protein folding.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Experiment and theory highlight role of native state topology in SH3 folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Basis for monomer stabilization in Rhodopseudomonas palustris cytochrome c' derived from the crystal structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Important role of hydrogen bonds in the structurally polarized transition state for folding of the src SH3 domain

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Contact order, transition state placement and the refolding rates of single domain proteins.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Theory of protein folding: the energy landscape perspective

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

From Levinthal to pathways to funnels

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Different folding transition states may result in the same native structure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Resonance energy transfer: methods and applications

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Single versus parallel pathways of protein folding and fractional formation of structure in the transition state

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Funnels, pathways, and the energy landscape of protein folding: a synthesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Simultaneous determination of intramolecular distance distributions and conformational dynamics by global analysis of energy transfer measurements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Mapping the transition state and pathway of protein folding by protein engineering

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Conformational studies of a peptide corresponding to a region of the C-terminus of ribonuclease A: implications as a potential chain-folding initiation site.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Detection-dependent kinetics as a probe of folding landscape microstructure

12 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Folding, conformational changes, and dynamics of cytochromes C probed by NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Ultra-fast barrier-limited folding in the peripheral subunit-binding domain family

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Mapping the cytochrome C folding landscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Nature of the cytochrome c molten globule

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Critical role of beta-hairpin formation in protein G folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Stability and folding kinetics of structurally characterized cytochrome c-b562.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Kinetics of loop formation and breakage in the denatured state of iso-1-cytochrome c.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Conformational properties of the iso-1-cytochrome C denatured state: dependence on guanidine hydrochloride concentration

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Many faces of the unfolded state: conformational heterogeneity in denatured yeast cytochrome C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Cloning, heterologous expression, and characterization of recombinant class II cytochromes c from Rhodopseudomonas palustris

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Multiple probes reveal a native-like intermediate during low-temperature refolding of ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Effects of heme on the structure of the denatured state and folding kinetics of cytochrome b562.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

3 The preparation of guanidine hydrochloride

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach

26 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

An Obligatory Intermediate in the Folding Pathway of Cytochromec552fromHydrogenobacter thermophilus

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Movement of the position of the transition state in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0609413103

Different secondary structure elements as scaffolds for protein folding transition states of two homologous four-helix bundles

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Interpreting the folding kinetics of helical proteins

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1765420

Is burst hydrophobic collapse necessary for protein folding?

15 November 2018

1 reference

12 December 2020

Low barrier kinetics: dependence on observables and free energy surface

1 reference

12 December 2020

Measuring denatured state energetics: deviations from random coil behavior and implications for the folding of iso-1-cytochrome c

1 reference

12 December 2020

Specific and nonspecific collapse in protein folding funnels

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0609413103

1 reference

8 August 2017

0 references

1 reference

8 August 2017

1 reference