(Q33933763)

English

Determination of the folding transition states of barnase by using PhiI-value-restrained simulations validated by double mutant PhiIJ-values

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scholarly article

1 reference

Europe PubMed Central

30 July 2017

Determination of the folding transition states of barnase by using PhiI-value-restrained simulations validated by double mutant PhiIJ-values (English)

1 reference

Europe PubMed Central

30 July 2017

3

object named as

Alan R Fersht

1 reference

Europe PubMed Central

30 July 2017

Michele Vendruscolo

4

object named as

Michele Vendruscolo

1 reference

Europe PubMed Central

30 July 2017

2

object named as

Christopher M Dobson

1 reference

Europe PubMed Central

30 July 2017

Xavier Salvatella

object named as

Xavier Salvatella

1

0 references

language of work or name

0 references

publication date

22 August 2005

1 reference

Europe PubMed Central

30 July 2017

Proceedings of the National Academy of Sciences of the United States of America

1 reference

Europe PubMed Central

30 July 2017

102

1 reference

Europe PubMed Central

30 July 2017

12389-12394

1 reference

Europe PubMed Central

30 July 2017

35

1 reference

Europe PubMed Central

30 July 2017

Relationship of Leffler (Bronsted) alpha values and protein folding Phi values to position of transition-state structures on reaction coordinates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Transition states for protein folding have native topologies despite high structural variability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Testing protein-folding simulations by experiment: B domain of protein A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Protein folding and misfolding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

DSSPcont: Continuous secondary structure assignments for proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Self-consistent determination of the transition state for protein folding: application to a fibronectin type III domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Determination of a transition state at atomic resolution from protein engineering data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

A structural double-mutant cycle: estimating the strength of a buried salt bridge in barnase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Protein folding and unfolding at atomic resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Three key residues form a critical contact network in a protein folding transition state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

A kinetically significant intermediate in the folding of barnase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Absence of stable intermediates on the folding pathway of barnase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Experiment and theory highlight role of native state topology in SH3 folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Effective energy function for proteins in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

The fundamentals of protein folding: bringing together theory and experiment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Nucleation mechanisms in protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Initiation sites of protein folding by NMR analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Structure of the transition state for the folding/unfolding of the barley chymotrypsin inhibitor 2 and its implications for mechanisms of protein folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Characterizing transition states in protein folding: an essential step in the puzzle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

A comparison of the pH, urea, and temperature-denatured states of barnase by heteronuclear NMR: implications for the initiation of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Molecular structure of a new family of ribonucleases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Mapping the transition state and pathway of protein folding by protein engineering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Transient folding intermediates characterized by protein engineering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Estimating the contribution of engineered surface electrostatic interactions to protein stability by using double-mutant cycles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

COSMIC analysis of the major alpha-helix of barnase during folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

The folding of an enzyme. IV. Structure of an intermediate in the refolding of barnase analysed by a protein engineering procedure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analysed by a protein engineering procedure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1194897

5 July 2018

Structure of the transition state for folding of a protein derived from experiment and simulation.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

The kinetic pathway of folding of barnase.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

Molecular dynamics simulation of the unfolding of barnase: characterization of the major intermediate.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

Lack of definable nucleation sites in the rate-limiting transition state of barnase under native conditions

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

Commitment and nucleation in the protein G transition state.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

Assembly of A beta amyloid protofibrils: an in vitro model for a possible early event in Alzheimer's disease.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

Small-world view of the amino acids that play a key role in protein folding.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

Parallel protein-unfolding pathways revealed and mapped

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408226102

21 January 2018

Relationship between the native-state hydrogen exchange and the folding pathways of barnase

1 reference

https://pubmed.ncbi.nlm.nih.gov/16116084

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus)

1 reference

https://pubmed.ncbi.nlm.nih.gov/16116084

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Folding of barnase in parts

1 reference

https://pubmed.ncbi.nlm.nih.gov/16116084

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfo

1 reference

https://pubmed.ncbi.nlm.nih.gov/16116084

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Folding nucleus: specific or multiple? Insights from lattice models and experiments

1 reference

https://pubmed.ncbi.nlm.nih.gov/16116084

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Acquisition of native-like interactions in C-terminal fragments of barnase

1 reference

https://pubmed.ncbi.nlm.nih.gov/16116084

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.0408226102

1 reference

Europe PubMed Central

30 July 2017

2005PNAS..10212389S

0 references

1 reference

Europe PubMed Central

30 July 2017

1 reference

Europe PubMed Central

30 July 2017

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