(Q37569523)

English

Relationship of Leffler (Bronsted) alpha values and protein folding Phi values to position of transition-state structures on reaction coordinates

scholarly article

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scholarly article

1 reference

Europe PubMed Central

21 August 2017

Relationship of Leffler (Bronsted) alpha values and protein folding Phi values to position of transition-state structures on reaction coordinates (English)

1 reference

Europe PubMed Central

21 August 2017

protein folding

0 references

protein structure

0 references

1

object named as

Alan R Fersht

1 reference

Europe PubMed Central

21 August 2017

language of work or name

0 references

publication date

21 September 2004

1 reference

Europe PubMed Central

21 August 2017

Proceedings of the National Academy of Sciences of the United States of America

1 reference

Europe PubMed Central

21 August 2017

101

1 reference

Europe PubMed Central

21 August 2017

40

1 reference

Europe PubMed Central

21 August 2017

14338-14342

1 reference

Europe PubMed Central

21 August 2017

Context-dependent contributions of backbone hydrogen bonding to beta-sheet folding energetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Phi-value analysis and the nature of protein-folding transition states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

The folding transition state of the cold shock protein is strongly polarized

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Scattered Hammond plots reveal second level of site-specific information in protein folding: phi' (beta++).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Theory of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Transition states for protein folding have native topologies despite high structural variability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Testing protein-folding simulations by experiment: B domain of protein A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Converting conformational changes to electrostatic energy in molecular motors: The energetics of ATP synthase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Origin of unusual phi-values in protein folding: evidence against specific nucleation sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Unifying features in protein-folding mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

The present view of the mechanism of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

The complete folding pathway of a protein from nanoseconds to microseconds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Is there a unifying mechanism for protein folding?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Determination of a transition state at atomic resolution from protein engineering data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Molecular dynamics simulations of the protein unfolding/folding reaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Protein folding and unfolding at atomic resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Using flexible loop mimetics to extend -value analysis to secondary structure interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Protein folding theory: from lattice to all-atom models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Three key residues form a critical contact network in a protein folding transition state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Characterisation of the transition states for protein folding: towards a new level of mechanistic detail in protein engineering analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

The folding nucleus of a fibronectin type III domain is composed of core residues of the immunoglobulin-like fold

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Mapping the interactions present in the transition state for unfolding/folding of FKBP12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Application of physical organic chemistry to engineered mutants of proteins: Hammond postulate behavior in the transition state of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Characterizing transition states in protein folding: an essential step in the puzzle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Mapping the transition state and pathway of protein folding by protein engineering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

23 August 2017

Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

14 September 2017

Protein denaturation. C. Theoretical models for the mechanism of denaturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

14 September 2017

Titration properties and thermodynamics of the transition state for folding: comparison of two-state and multi-state folding pathways.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

25 June 2018

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

25 June 2018

Structure-activity relationships in engineered proteins: analysis of use of binding energy by linear free energy relationships

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521971

25 June 2018

A Correlation of Reaction Rates

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

A primer for the Bema Hapothle. An empirical approach to the characterization of changing transition-state structures

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

How do small single-domain proteins fold?

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

Increasing temperature accelerates protein unfolding without changing the pathway of unfolding

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

Parameters for the Description of Transition States

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

Quantitative analysis of structure–activity relationships in engineered proteins by linear free-energy relationships

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

Movement of the position of the transition state in protein folding

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

Protein-folding dynamics

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406091101

21 January 2018

Rate-equilibrium relationships in hydride transfer reactions: the role of intrinsic barriers

1 reference

https://pubmed.ncbi.nlm.nih.gov/15383660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

P22 Arc Repressor: Transition State Properties Inferred from Mutational Effects on the Rates of Protein Unfolding and Refolding

1 reference

https://pubmed.ncbi.nlm.nih.gov/15383660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfo

1 reference

https://pubmed.ncbi.nlm.nih.gov/15383660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/15383660

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.0406091101

1 reference

Europe PubMed Central

21 August 2017

2004PNAS..10114338F

0 references

1 reference

Europe PubMed Central

21 August 2017

1 reference

Europe PubMed Central

21 August 2017

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