(Q35576377)

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Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance

scientific article published on 6 May 2015

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Europe PubMed Central

PubMed publication ID

8 August 2017

Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance (English)

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Europe PubMed Central

PubMed publication ID

8 August 2017

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Suaeda fruticosa

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Suaeda fruticosa

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Joann Diray-Arce

1

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Europe PubMed Central

PubMed publication ID

8 August 2017

Mark Clement

2

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Europe PubMed Central

PubMed publication ID

8 August 2017

Bilquees Gul

3

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Europe PubMed Central

PubMed publication ID

8 August 2017

M Ajmal Khan

4

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Europe PubMed Central

PubMed publication ID

8 August 2017

Brent L Nielsen

5

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Europe PubMed Central

PubMed publication ID

8 August 2017

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6 May 2015

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Europe PubMed Central

PubMed publication ID

8 August 2017

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Europe PubMed Central

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8 August 2017

16

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Europe PubMed Central

PubMed publication ID

8 August 2017

353

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Europe PubMed Central

PubMed publication ID

8 August 2017

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Creative Commons Attribution 4.0 International

6 May 2015

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EdgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

BamBam: genome sequence analysis tools for biologists

1 reference

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Transcriptome analysis of Salicornia europaea under saline conditions revealed the adaptive primary metabolic pathways as early events to facilitate salt adaptation

1 reference

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Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum).

1 reference

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A genome-wide expression profile of salt-responsive genes in the apple rootstock Malus zumi

1 reference

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Deep transcriptome sequencing of wild halophyte rice, Porteresia coarctata, provides novel insights into the salinity and submergence tolerance factors

1 reference

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1 reference

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Global transcriptome profiling of Salicornia europaea L. shoots under NaCl treatment

1 reference

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Rapidly evolving genes and stress adaptation of two desert poplars, Populus euphratica and P. pruinosa.

1 reference

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The Reference Genome of the Halophytic Plant Eutrema salsugineum

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12 July 2018

Transcriptome exploration in Leymus chinensis under saline-alkaline treatment using 454 pyrosequencing

1 reference

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12 July 2018

Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings

1 reference

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12 July 2018

Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna

1 reference

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12 July 2018

Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing

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12 July 2018

Transcriptional homeostasis of a mangrove species, Ceriops tagal, in saline environments, as revealed by microarray analysis

1 reference

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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

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Computational methods for transcriptome annotation and quantification using RNA-seq

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12 July 2018

Genome-scale transcriptome analysis of the desert poplar, Populus euphratica.

1 reference

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12 July 2018

Linking the salt transcriptome with physiological responses of a salt-resistant Populus species as a strategy to identify genes important for stress acclimation

1 reference

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12 July 2018

Using the Velvet de novo assembler for short-read sequencing technologies

1 reference

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12 July 2018

Calmodulin-binding transcription activator 1 mediates auxin signaling and responds to stresses in Arabidopsis.

1 reference

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12 July 2018

WRKY transcription factors

1 reference

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12 July 2018

Reverse transcription of the ribonucleic acid: the first step in RT-PCR assay

1 reference

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12 July 2018

Fast and SNP-tolerant detection of complex variants and splicing in short reads

1 reference

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12 July 2018

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12 July 2018

Isolation, identification and expression analysis of salt-induced genes in Suaeda maritima, a natural halophyte, using PCR-based suppression subtractive hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422317

12 July 2018

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422317

12 July 2018

The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422317

12 July 2018

Salinity tolerance in halophytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422317

12 July 2018

LEA (late embryogenesis abundant) proteins and their encoding genes in Arabidopsis thaliana

1 reference

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12 July 2018

Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422317

12 July 2018

Transcript profiling of salinity stress responses by large-scale expressed sequence tag analysis in Mesembryanthemum crystallinum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422317

12 July 2018

CBL1, a calcium sensor that differentially regulates salt, drought, and cold responses in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422317

12 July 2018

Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4422317

12 July 2018

Targets of AtWRKY6 regulation during plant senescence and pathogen defense.

1 reference

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12 July 2018

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

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12 July 2018

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12 July 2018

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1 reference

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12 July 2018

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12 July 2018

Stress signaling through Ca2+/calmodulin-dependent protein phosphatase calcineurin mediates salt adaptation in plants

1 reference

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26 September 2018

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https://pubmed.ncbi.nlm.nih.gov/25943316

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based on heuristic

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10.1186/S12864-015-1553-X

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Europe PubMed Central

PubMed publication ID

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24 November 2022

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