(Q35581569)

English

Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast

scientific article published on 7 May 2015

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scholarly article

1 reference

Europe PubMed Central

9 August 2017

Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast (English)

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Europe PubMed Central

9 August 2017

Edoardo Airoldi

4

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11 June 2020

D. Allan Drummond

5

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11 June 2020

author name string

Gábor Csárdi

1

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11 June 2020

Alexander Franks

2

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11 June 2020

David S Choi

3

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11 June 2020

publication date

7 May 2015

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9 August 2017

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11 June 2020

11

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11 June 2020

e1005206

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11 June 2020

5

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11 June 2020

copyright license

Creative Commons Attribution 4.0 International

7 May 2015

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April 2022 Public Data File from Crossref

copyright status

0 references

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1 reference

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1 reference

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Transcriptional regulation is only half the story

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Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1005206

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1 reference

https://pubmed.ncbi.nlm.nih.gov/25950722

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based on heuristic

inferred from PubMed ID database lookup

There is a steady-state transcriptome in exponentially growing yeast cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/25950722

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based on heuristic

inferred from PubMed ID database lookup

Intracellular translation initiation factor levels in Saccharomyces cerevisiae and their role in cap-complex function

1 reference

https://pubmed.ncbi.nlm.nih.gov/25950722

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1005206

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25950722%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25950722%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25950722%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

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