(Q35604462)

English

Solution structure of the state 1 conformer of GTP-bound H-Ras protein and distinct dynamic properties between the state 1 and state 2 conformers

scientific article published on 19 September 2011

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scholarly article

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Europe PubMed Central

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13 February 2020

Solution structure of the state 1 conformer of GTP-bound H-Ras protein and distinct dynamic properties between the state 1 and state 2 conformers (English)

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13 February 2020

solution structure

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based on heuristic

inferred from title

9

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13 February 2020

author name string

Mitsugu Araki

1

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13 February 2020

Fumi Shima

2

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13 February 2020

Yoko Yoshikawa

3

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13 February 2020

Shin Muraoka

4

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13 February 2020

Yuichi Ijiri

5

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13 February 2020

Yuka Nagahara

6

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13 February 2020

Tomoya Shirono

7

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13 February 2020

Tohru Kataoka

8

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13 February 2020

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publication date

19 September 2011

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13 February 2020

Journal of Biological Chemistry

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13 February 2020

286

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13 February 2020

45

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13 February 2020

39644-39653

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13 February 2020

Critical roles of interactions among switch I-preceding residues and between switch II and its neighboring alpha-helix in conformational dynamics of the GTP-bound Ras family small GTPases

1 reference

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12 July 2018

Relation between the conformational heterogeneity and reaction cycle of Ras: molecular simulation of Ras.

1 reference

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Conformational states of human rat sarcoma (Ras) protein complexed with its natural ligand GTP and their role for effector interaction and GTP hydrolysis

1 reference

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12 July 2018

Structural Basis for Conformational Dynamics of GTP-bound Ras Protein

1 reference

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12 July 2018

Solution structure and dynamics of the small GTPase RalB in its active conformation: significance for effector protein binding

1 reference

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12 July 2018

Crystal structure of M-Ras reveals a GTP-bound "off" state conformation of Ras family small GTPases.

1 reference

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12 July 2018

Targeting RAS signalling pathways in cancer therapy

1 reference

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12 July 2018

The many faces of Ras: recognition of small GTP-binding proteins

1 reference

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12 July 2018

The guanine nucleotide-binding switch in three dimensions

1 reference

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12 July 2018

Dynamic activation of protein function: a view emerging from NMR spectroscopy.

1 reference

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12 July 2018

Dynamic properties of the Ras switch I region and its importance for binding to effectors

1 reference

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12 July 2018

Crystal structure and functional analysis of Ras binding to its effector phosphoinositide 3-kinase gamma

1 reference

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12 July 2018

Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex

1 reference

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12 July 2018

Structure of a transiently phosphorylated switch in bacterial signal transduction

1 reference

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12 July 2018

GEFs: structural basis for their activation of small GTP-binding proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234787

12 July 2018

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

1 reference

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12 July 2018

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

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12 July 2018

The structural basis of the activation of Ras by Sos

1 reference

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12 July 2018

Structural basis for the interaction of Ras with RalGDS

1 reference

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12 July 2018

The entropy cost of protein association.

1 reference

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12 July 2018

Torsion angle dynamics for NMR structure calculation with the new program DYANA

1 reference

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12 July 2018

Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234787

12 July 2018

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234787

12 July 2018

MOLMOL: a program for display and analysis of macromolecular structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3234787

12 July 2018

Solution structure and dynamics of ras p21.GDP determined by heteronuclear three- and four-dimensional NMR spectroscopy

1 reference

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12 July 2018

Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation

1 reference

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12 July 2018

Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease

1 reference

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12 July 2018

Calculation of protein extinction coefficients from amino acid sequence data

1 reference

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12 July 2018

Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: implications for the mechanism of GTP hydrolysis

1 reference

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12 July 2018

Fundamental link between folding states and functional states of proteins

1 reference

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25 September 2018

Global conformational dynamics in ras.

1 reference

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25 September 2018

Two conformational states of Ras GTPase exhibit differential GTP-binding kinetics

1 reference

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25 September 2018

Structure of the G60A mutant of Ras: implications for the dominant negative effect

1 reference

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25 September 2018

Perturbation of the conformational equilibria in Ras by selective mutations as studied by 31P NMR spectroscopy

1 reference

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An increase in side chain entropy facilitates effector binding: NMR characterization of the side chain methyl group dynamics in Cdc42Hs

1 reference

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25 September 2018

Conformational transitions in p21ras and in its complexes with the effector protein Raf-RBD and the GTPase activating protein GAP.

1 reference

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25 September 2018

Recognizing and defining true Ras binding domains I: biochemical analysis

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Slow conformational dynamics of the guanine nucleotide-binding protein Ras complexed with the GTP analogue GTPgammaS

1 reference

https://pubmed.ncbi.nlm.nih.gov/21930707

12 December 2020

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inferred from PubMed ID database lookup

Conformational and dynamic differences between N-ras P21 bound to GTPgammaS and to GMPPNP as studied by NMR

1 reference

https://pubmed.ncbi.nlm.nih.gov/21930707

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.M111.227074

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930707%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930707%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21930707%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

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