(Q35717703)

9 August 2017

title

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts (English)

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9 August 2017

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1

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16

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14

Urmas Kõljalg

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Johan Bengtsson-Palme

Johan Bengtsson-Palme

8

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Leho Tedersoo

2

Leho Tedersoo

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9 August 2017

13

Karl-Henrik Larsson

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9 August 2017

6

Martin Unterseher

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9 August 2017

3

Martin Ryberg

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9 August 2017

Hannes Andres Gamper

11

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Martin Hartmann

Martin Hartmann

5

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Teresita M Porter

7

Teresita M Porter

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9 August 2017

12

Ellen Larsson

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9 August 2017

Erik Kristiansson

4

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9 August 2017

Donald M Walker

9

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9 August 2017

Filipe de Sousa

10

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9 August 2017

Robert C Edgar

15

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9 August 2017

language of work or name

English

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publication date

19 March 2015

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Microbes and environments / JSME

9 August 2017

published in

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9 August 2017

volume

30

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9 August 2017

issue

2

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9 August 2017

page(s)

145-150

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Fungal biogeography. Global diversity and geography of soil fungi

9 August 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Does host plant richness explain diversity of ectomycorrhizal fungi? Re-evaluation of Gao et al. (2013) data sets reveals sampling effects

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Towards a unified paradigm for sequence-based identification of fungi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

UPARSE: highly accurate OTU sequences from microbial amplicon reads

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Fungal systematics: is a new age of enlightenment at hand?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

The International Nucleotide Sequence Database Collaboration.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

UCHIME improves sensitivity and speed of chimera detection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Removing noise from pyrosequenced amplicons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Current state and perspectives of fungal DNA barcoding and rapid identification procedures

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Intergeneric transfer of ribosomal genes between two fungi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Host-parasite relationships among bolete infecting Hypomyces species

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Parsing ecological signal from noise in next generation amplicon sequencing.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

An open source chimera checker for the fungal ITS region

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Search and clustering orders of magnitude faster than BLAST

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

The promise and pitfalls of sequence-based identification of plant-pathogenic fungi and oomycetes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

The UNITE database for molecular identification of fungi--recent updates and future perspectives

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4462924

Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25786896

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hybridization among cryptic species of the cellar fungus Coniophora puteana (Basidiomycota)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25786896

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25786896

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1264/JSME2.ME14121

1 reference

9 August 2017

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9 August 2017

1 reference