(Q35764452)

10 August 2017

title

Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders (English)

1 reference

10 August 2017

8

Leonardo Beccari

1 reference

10 August 2017

Rafael D Acemel

3

0 references

Carlos Gómez-Marín

Carlos Gómez-Marín

1

0 references

Silvia Naranjo

Silvia Naranjo

Elisa de la Calle-Mustienes

5

0 references

Elisa de la Calle-Mustienes

6

0 references

Ignacio Maeso

Ignacio Maeso

7

0 references

Juan J Tena

Juan J Tena

2

0 references

Paola Bovolenta

Paola Bovolenta

11

0 references

Jaime J Carvajal

Jaime Carvajal

13

0 references

author name string

Macarena López-Mayorga

4

1 reference

10 August 2017

Ivy Aneas

9

1 reference

10 August 2017

Erika Vielmas

10

1 reference

10 August 2017

Marcelo A Nobrega

12

1 reference

10 August 2017

José Luis Gómez-Skarmeta

14

1 reference

10 August 2017

language of work or name

English

0 references

publication date

1 June 2015

1 reference

Proceedings of the National Academy of Sciences of the United States of America

10 August 2017

published in

1 reference

10 August 2017

volume

112

1 reference

10 August 2017

issue

24

1 reference

10 August 2017

page(s)

7542-7547

1 reference

Deep conservation of wrist and digit enhancers in fish

10 August 2017

cites work

1 reference

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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

2 October 2017

1 reference

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Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Unraveling architecture of the pluripotent genome.

2 October 2017

1 reference

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Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Obesity-associated variants within FTO form long-range functional connections with IRX3

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

CTCF: an architectural protein bridging genome topology and function

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Topology of mammalian developmental enhancers and their regulatory landscapes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

A high-resolution map of the three-dimensional chromatin interactome in human cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Characterization of constitutive CTCF/cohesin loci: a possible role in establishing topological domains in mammalian genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Modification of enhancer chromatin: what, how, and why?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

An integrated encyclopedia of DNA elements in the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Landscapes and archipelagos: spatial organization of gene regulation in vertebrates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Spatial partitioning of the regulatory landscape of the X-inactivation centre

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Topological domains in mammalian genomes identified by analysis of chromatin interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Three-dimensional folding and functional organization principles of the Drosophila genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

The evolution of nervous system patterning: insights from sea urchin development

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Six3 demarcates the anterior-most developing brain region in bilaterian animals.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Detection of functional DNA motifs via statistical over-representation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Capturing chromosome conformation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Comparative genomics provides evidence for an ancient genome duplication event in fish

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

The expression of Myf5 in the developing mouse embryo is controlled by discrete and dispersed enhancers specific for particular populations of skeletal muscle precursors

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Genomic cloning and characterization of the human homeobox gene SIX6 reveals a cluster of SIX genes in chromosome 14 and associates SIX6 hemizygosity with bilateral anophthalmia and pituitary anomalies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Rapid BAC selection for tol2-mediated transgenesis in zebrafish.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Whole mount in situ hybridization shows Endo 16 to be a marker for the vegetal plate territory in sea urchin embryos

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Enhancer loops appear stable during development and are associated with paused polymerase.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

A switch between topological domains underlies HoxD genes collinearity in mouse limbs

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Transposon-mediated BAC transgenesis in zebrafish.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

The dynamic architecture of Hox gene clusters.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Odd-skipped genes encode repressors that control kidney development.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4475986

Whole-mount in situ hybridizations on zebrafish embryos using a mixture of digoxigenin- and fluorescein-labelled probes

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26034287

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1505463112

1 reference

10 August 2017

0 references

1 reference

10 August 2017

1 reference