(Q35764790)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

title

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome (English)

1 reference

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23 February 2020

1 reference

1

1 reference

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23 February 2020

Matteo Brilli

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Francesco Pini

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Alessio Mengoni

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Kristof Engelen

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Marco Moretto

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Giovanni Bacci

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

13

Marco Bazzicalupo

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

12

Emanuele G Biondi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

3

Giulia Spini

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

6

Alessia Bani

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

author name string

Matteo Rossi

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Bianca Roncaglia

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Manuela Chiancianesi

7

1 reference

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23 February 2020

publication date

4 September 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

23 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

issue

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

page(s)

e1004478

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

23 February 2020

copyright license

start time

4 September 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Jupyter notebook file

1 reference

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4560400/

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2 October 2017

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2 October 2017

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Genomic analysis of a key innovation in an experimental Escherichia coli population

2 October 2017

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2 October 2017

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A single promoter inversion switches Photorhabdus between pathogenic and mutualistic states

2 October 2017

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2 October 2017

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Draft genome sequence of Sinorhizobium meliloti CCNWSX0020, a nitrogen-fixing symbiont with copper tolerance capability isolated from lead-zinc mine tailings

2 October 2017

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2 October 2017

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CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes

2 October 2017

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Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti

2 October 2017

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The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome

2 October 2017

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Hidden Markov model speed heuristic and iterative HMM search procedure

2 October 2017

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Genomic repertoires of DNA-binding transcription factors across the tree of life

2 October 2017

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Genetic flexibility of regulatory networks

2 October 2017

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The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

2 October 2017

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DendroPy: a Python library for phylogenetic computing

2 October 2017

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Comparative genomics of VirR regulons in Clostridium perfringens strains

2 October 2017

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A new generation of homology search tools based on probabilistic inference

2 October 2017

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Introducing the bacterial 'chromid': not a chromosome, not a plasmid.

2 October 2017

1 reference

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Different gene regulation strategies revealed by analysis of binding motifs

2 October 2017

1 reference

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Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.

2 October 2017

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MEME SUITE: tools for motif discovery and searching

2 October 2017

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Biopython: freely available Python tools for computational molecular biology and bioinformatics

2 October 2017

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Pseudocounts for transcription factor binding sites.

2 October 2017

1 reference

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Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates

2 October 2017

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RSAT: regulatory sequence analysis tools

2 October 2017

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Regulation of motility by the ExpR/Sin quorum-sensing system in Sinorhizobium meliloti

2 October 2017

1 reference

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From biophysics to evolutionary genetics: statistical aspects of gene regulation

2 October 2017

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Primer3Plus, an enhanced web interface to Primer3

2 October 2017

1 reference

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Modes and modulations of antibiotic resistance gene expression

2 October 2017

1 reference

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RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

2 October 2017

1 reference

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Regulation of gene expression in Streptococcus pneumoniae by response regulator 09 is strain dependent

2 October 2017

1 reference

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Bacterial regulatory networks are extremely flexible in evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

FixJ: a major regulator of the oxygen limitation response and late symbiotic functions of Sinorhizobium meliloti

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Evolution of transcriptional regulatory networks in microbial genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

2 October 2017

The microbial pan-genome

1 reference

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Transcriptional regulatory code of a eukaryotic genome

2 October 2017

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Regulatory sequence analysis tools

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

The composite genome of the legume symbiont Sinorhizobium meliloti

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Genetic organization of the region encoding regulation, biosynthesis, and transport of rhizobactin 1021, a siderophore produced by Sinorhizobium meliloti

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Basic local alignment search tool

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Plant-bacteria association and symbiosis: are there common genomic traits in alphaproteobacteria?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Complete Genome Sequence of the Alfalfa Symbiont Sinorhizobium/Ensifer meliloti Strain GR4.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Genome Sequence of Sinorhizobium meliloti Rm41.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

RSAT 2011: regulatory sequence analysis tools.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

RhizoRegNet--a database of rhizobial transcription factors and regulatory networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Evolvability and hierarchy in rewired bacterial gene networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Structure and evolution of gene regulatory networks in microbial genomes.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Evolutionary dynamics of prokaryotic transcriptional regulatory networks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

A family of promoter probe vectors incorporating autofluorescent and chromogenic reporter proteins for studying gene expression in Gram-negative bacteria

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Operon prediction without a training set.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4560400

Design of a linguistic statistical decoder for the recognition of continuous speech

25 September 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004478

Matplotlib: A 2D Graphics Environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004478

IPython: A System for Interactive Scientific Computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004478

Molecular phylogeny of the nickel-resistance gene nreB and functional role in the nickel sensitive symbiotic nitrogen fixing bacterium Sinorhizobium meliloti

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004478

The NumPy Array: A Structure for Efficient Numerical Computation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1004478

Two distinct classes of FixJ binding sites defined by in vitro selection

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26340565

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Amylases in the Human Vagina

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1371/JOURNAL.PCBI.1004478

Identifiers

DOI

10.1371/JOURNAL.PCBI.1004478

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/GalardiniBSRRBC15

23 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

PubMed publication ID

26340565

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26340565%20AND%20SRC:MED&resulttype=core&format=json