(Q49173858)

18 February 2018

title

Structure and evolution of gene regulatory networks in microbial genomes. (English)

1 reference

18 February 2018

author

Sarath Chandra Janga

series ordinal

1

1 reference

18 February 2018

Julio Collado-Vides

object named as

J Collado-Vides

series ordinal

2

0 references

publication date

15 October 2007

1 reference

18 February 2018

published in

Research in Microbiology

1 reference

18 February 2018

volume

158

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18 February 2018

issue

10

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18 February 2018

page(s)

787-794

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18 February 2018

Network motifs: theory and experimental approaches

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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Identification and analysis of 'extended -10' promoters in Escherichia coli.

22 May 2018

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Genome wide identification of regulatory motifs in Bacillus subtilis

22 May 2018

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Evolution of transcription factors and the gene regulatory network in Escherichia coli

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

The sigma70 family of sigma factors

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Transcriptional regulatory networks in Saccharomyces cerevisiae

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Identification of the binding sites of regulatory proteins in bacterial genomes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

The extracytoplasmic function (ECF) sigma factors

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Network motifs in the transcriptional regulation network of Escherichia coli

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Prokaryotic transcription regulators: more than just the helix-turn-helix motif

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Massive gene decay in the leprosy bacillus

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Prediction of transcription terminators in bacterial genomes.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Engineering stability in gene networks by autoregulation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Co-evolution of transcription factors and their targets depends on mode of regulation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Evolutionary dynamics of prokaryotic transcriptional regulatory networks

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

The regional rule for bacterial base composition.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Modular analysis of the transcriptional regulatory network of E. coli.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Gene regulatory network growth by duplication

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Molecular biology. When a part is as good as the whole.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Functional determinants of transcription factors in Escherichia coli: protein families and binding sites

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Comparative Studies of Transcriptional Regulation Mechanisms in a Group of Eight Gamma-proteobacterial Genomes

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5696542

Genome-wide analysis of bacterial promoter regions

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17996425

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Topological and causal structure of the yeast transcriptional regulatory network

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17996425

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.RESMIC.2007.09.001

1 reference

18 February 2018

PMCID

5696542

1 reference

18 February 2018

PubMed ID

17996425

1 reference

18 February 2018