(Q35783502)

10 August 2017

title

Co-Inheritance Analysis within the Domains of Life Substantially Improves Network Inference by Phylogenetic Profiling (English)

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10 August 2017

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2

Insuk Lee

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10 August 2017

Junha Shin

1

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10 August 2017

language of work or name

English

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publication date

22 September 2015

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10 August 2017

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10 August 2017

volume

10

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10 August 2017

issue

9

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10 August 2017

page(s)

e0139006

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Creative Commons Attribution 4.0 International

10 August 2017

copyright license

start time

22 September 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Systematic Discovery of Human Gene Function and Principles of Modular Organization through Phylogenetic Profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

27 July 2018

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The SUPERFAMILY 1.75 database in 2014: a doubling of data

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

The GOA database: gene Ontology annotation updates for 2015

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Saccharomyces genome database provides new regulation data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

The Genome Database for Rosaceae (GDR): year 10 update

27 July 2018

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Assembly information services in the European Nucleotide Archive

27 July 2018

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WormBase 2014: new views of curated biology

27 July 2018

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Human disease locus discovery and mapping to molecular pathways through phylogenetic profiling.

27 July 2018

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The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

27 July 2018

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Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes

27 July 2018

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Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling

27 July 2018

1 reference

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An improved method for identifying functionally linked proteins using phylogenetic profiles

27 July 2018

1 reference

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Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

The TIGR Rice Genome Annotation Resource: improvements and new features

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Chinese institute makes bold sequencing play.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Comparative assessment of performance and genome dependence among phylogenetic profiling methods

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Refined phylogenetic profiles method for predicting protein-protein interactions

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Who's your neighbor? New computational approaches for functional genomics

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4578931

Database resources of the National Center for Biotechnology Information

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0139006

A probabilistic functional network of yeast genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26394049

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0139006

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10 August 2017

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10 August 2017

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