(Q35876030)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

Juan Carlos Rivera-Mulia

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

6

Kristopher Nazor

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

7

Jeanne F Loring

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

14

Stephen Dalton

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

author name string

Quinton Buckley

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Takayo Sasaki

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Jared Zimmerman

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Ruth A Didier

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Zheng Lian

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Sherman Weissman

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Allan J Robins

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Thomas C Schulz

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Laura Menendez

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Michael J Kulik

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Haitham Gabr

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Tamer Kahveci

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

David M Gilbert

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

publication date

8 June 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

volume

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

page(s)

1091-1103

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

16 February 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4509994

inferred from PubMed Central ID database lookup

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27 July 2018

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ASAR15, A cis-acting locus that controls chromosome-wide replication timing and stability of human chromosome 15

27 July 2018

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Genetic variation in human DNA replication timing

27 July 2018

1 reference

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Topologically associating domains are stable units of replication-timing regulation

27 July 2018

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27 July 2018

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Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization

27 July 2018

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27 July 2018

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Deregulated origin licensing leads to chromosomal breaks by rereplication of a gapped DNA template

27 July 2018

1 reference

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Epigenomic analysis of multilineage differentiation of human embryonic stem cells

27 July 2018

1 reference

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Transcriptional and epigenetic dynamics during specification of human embryonic stem cells

27 July 2018

1 reference

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The replication domain model: regulating replicon firing in the context of large-scale chromosome architecture

27 July 2018

1 reference

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Asynchronous replication, mono-allelic expression, and long range Cis-effects of ASAR6.

27 July 2018

1 reference

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Systematic determination of replication activity type highlights interconnections between replication, chromatin structure and nuclear localization

27 July 2018

1 reference

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Developmental control of replication timing defines a new breed of chromosomal domains with a novel mechanism of chromatin unfolding

27 July 2018

1 reference

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Architecture of the human regulatory network derived from ENCODE data

27 July 2018

1 reference

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3D chromatin conformation correlates with replication timing and is conserved in resting cells

27 July 2018

1 reference

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Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia

27 July 2018

1 reference

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

27 July 2018

1 reference

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Critical evaluation of imprinted gene expression by RNA-Seq: a new perspective

27 July 2018

1 reference

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DNA replication timing is maintained genome-wide in primary human myoblasts independent of D4Z4 contraction in FSH muscular dystrophy

27 July 2018

1 reference

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Wnt signaling and a Smad pathway blockade direct the differentiation of human pluripotent stem cells to multipotent neural crest cells

27 July 2018

1 reference

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Replication timing: a fingerprint for cell identity and pluripotency

27 July 2018

1 reference

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Genome-scale analysis of replication timing: from bench to bioinformatics.

27 July 2018

1 reference

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An autosomal locus that controls chromosome-wide replication timing and mono-allelic expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Single-molecule analysis reveals changes in the DNA replication program for the POU5F1 locus upon human embryonic stem cell differentiation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation

27 July 2018

1 reference

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Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

27 July 2018

1 reference

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Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

27 July 2018

1 reference

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Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis

27 July 2018

1 reference

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G9a selectively represses a class of late-replicating genes at the nuclear periphery.

27 July 2018

1 reference

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

27 July 2018

1 reference

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Dynamics of alpha-globin locus chromatin structure and gene expression during erythroid differentiation of human CD34(+) cells in culture

27 July 2018

1 reference

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Erythroid cells in vitro: from developmental biology to blood transfusion products

27 July 2018

1 reference

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Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome

27 July 2018

1 reference

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ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data

27 July 2018

1 reference

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Global reorganization of replication domains during embryonic stem cell differentiation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Global organization of replication time zones of the mouse genome

27 July 2018

1 reference

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

A faster circular binary segmentation algorithm for the analysis of array CGH data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Monoallelic gene expression: a repertoire of recurrent themes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Java Treeview--extensible visualization of microarray data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Open source clustering software

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Replication timing of the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Directed neuronal differentiation of human embryonic stem cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Ex vivo expansion of hematopoietic stem cells by cytokines

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Prospective isolation of human clonogenic common myeloid progenitors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Replication and subnuclear location dynamics of the immunoglobulin heavy-chain locus in B-lineage cells.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Genomic imprinting: parental influence on the genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Spatial and temporal dynamics of DNA replication sites in mammalian cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Lineage commitment in human hemopoiesis involves asymmetric cell division of multipotent progenitors and does not appear to be influenced by cytokines

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Mapping replicational sites in the eucaryotic cell nucleus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

DNA replication and transcription programs respond to the same chromatin cues.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

A scalable system for production of functional pancreatic progenitors from human embryonic stem cells

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Interplay between DNA replication and gene expression: a harmonious coexistence

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Predictable dynamic program of timing of DNA replication in human cells

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Replication timing and transcriptional control: beyond cause and effect--part II.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Widespread monoallelic expression on human autosomes

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Human gene organization driven by the coordination of replication and transcription.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Progressive activation of DNA replication initiation in large domains of the immunoglobulin heavy chain locus during B cell development.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Coordination of replication and transcription along a Drosophila chromosome.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Differentiation of human embryonic stem cells to dopaminergic neurons in serum-free suspension culture

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Stable chromosomal units determine the spatial and temporal organization of DNA replication.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509994

The spatial position and replication timing of chromosomal domains are both established in early G1 phase

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26055160

12 December 2020

inferred from PubMed ID database lookup

Directed differentiation of human pluripotent cells to neural crest stem cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26055160

12 December 2020

inferred from PubMed ID database lookup

Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26055160

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1101/GR.187989.114

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

PubMed publication ID

26055160

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26055160%20AND%20SRC:MED&resulttype=core&format=json