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Fast multi-blind modification search through tandem mass spectrometry
scientific article published on 20 December 2011
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Europe PubMed Central
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3322561
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19 January 2020
title
Fast multi-blind modification search through tandem mass spectrometry
(English)
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Europe PubMed Central
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3322561
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19 January 2020
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Seungjin Na
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1
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3322561
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19 January 2020
Eunok Paek
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Eunok Paek
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Europe PubMed Central
PMC publication ID
3322561
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19 January 2020
author name string
Nuno Bandeira
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2
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19 January 2020
publication date
20 December 2011
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19 January 2020
published in
Molecular & Cellular Proteomics
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3322561
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19 January 2020
volume
11
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3322561
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19 January 2020
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4
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3322561
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19 January 2020
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M111.010199
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19 January 2020
cites work
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Comment on "Unbiased statistical analysis for multi-stage proteomic search strategies".
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
TagRecon: high-throughput mutation identification through sequence tagging
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
PTMap--a sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
In-depth analysis of tandem mass spectrometry data from disparate instrument types
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Conversion and compensatory evolution of the gamma-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Verification of automated peptide identifications from proteomic tandem mass spectra
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Protein identification by spectral networks analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Improving gene annotation using peptide mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: does deamidation contribute to crystallin insolubility?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Identification of post-translational modifications by blind search of mass spectra.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
A haplotype map of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Strategies for shotgun identification of post-translational modifications by mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Fragmentation pathways of protonated peptides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
The ABC's (and XYZ's) of peptide sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Proteomic analysis of post-translational modifications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Similarity between condensed phase and gas phase chemistry: fragmentation of peptides containing oxidized cysteine residues and its implications for proteomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Efficiency of database search for identification of mutated and modified proteins via mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Probability-based protein identification by searching sequence databases using mass spectrometry data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
The four terminal components of the complement system are C-mannosylated on multiple tryptophan residues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Error-tolerant identification of peptides in sequence databases by peptide sequence tags
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
11 July 2018
Prediction of novel modifications by unrestrictive search of tandem mass spectra.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
Glycosylation of aromatic amines I: Characterization of reaction products and kinetic scheme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
Unrestrictive identification of multiple post-translational modifications from tandem mass spectrometry using an error-tolerant algorithm based on an extended sequence tag approach
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
CIFTER: automated charge-state determination for peptide tandem mass spectra.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
Accurate annotation of peptide modifications through unrestrictive database search
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
Reliable detection of deamidated peptides from lens crystallin proteins using changes in reversed-phase elution times and parent ion masses.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
SPIDER: software for protein identification from sequence tags with de novo sequencing error.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
InsPecT: identification of posttranslationally modified peptides from tandem mass spectra
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
Unimod: Protein modifications for mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
Intensity-based protein identification by machine learning from a library of tandem mass spectra.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
Cyclization of N-terminal S-carbamoylmethylcysteine causing loss of 17 Da from peptides and extra peaks in peptide maps
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322561
retrieved
24 September 2018
Identification of protein modifications using MS/MS de novo sequencing and the OpenSea alignment algorithm
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22186716
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A method for reducing the time required to match protein sequences with tandem mass spectra
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22186716
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Extent of Modifications in Human Proteome Samples and Their Effect on Dynamic Range of Analysis in Shotgun Proteomics
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22186716
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Unbiased statistical analysis for multi-stage proteomic search strategies
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22186716
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1074/MCP.M111.010199
1 reference
stated in
Europe PubMed Central
PMC publication ID
3322561
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186716%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
PMC publication ID
3322561
1 reference
stated in
Europe PubMed Central
PMC publication ID
3322561
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186716%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
PubMed publication ID
22186716
1 reference
stated in
Europe PubMed Central
PMC publication ID
3322561
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186716%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 January 2020
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