(Q35878790)

10 August 2017

Generic comparison of protein inference engines (English)

1 reference

10 August 2017

Michael Otmar Hengartner

object named as

Michael O Hengartner

3

0 references

Ruedi Aebersold

5

object named as

Ruedi Aebersold

1 reference

10 August 2017

Manfred Claassen

1

1 reference

10 August 2017

Lukas Reiter

2

1 reference

10 August 2017

Joachim M Buhmann

4

1 reference

10 August 2017

4 November 2011

1 reference

Molecular & Cellular Proteomics

10 August 2017

1 reference

10 August 2017

11

1 reference

10 August 2017

4

1 reference

10 August 2017

O110.007088

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Proteome coverage prediction for integrated proteomics datasets

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Options and considerations when selecting a quantitative proteomics strategy

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

False discovery rates of protein identifications: a strike against the two-peptide rule

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Proteome coverage prediction with infinite Markov models

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Analysis and validation of proteomic data generated by tandem mass spectrometry

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

A high-quality catalog of the Drosophila melanogaster proteome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Data management and preliminary data analysis in the pilot phase of the HUPO Plasma Proteome Project

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Interpretation of shotgun proteomic data: the protein inference problem

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

DBParser: web-based software for shotgun proteomic data analyses

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

TANDEM: matching proteins with tandem mass spectra

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

A statistical model for identifying proteins by tandem mass spectrometry

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Mass spectrometry-based proteomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Probability-based protein identification by searching sequence databases using mass spectrometry data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322578

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

11 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O110.007088

Empirical bayes methods and false discovery rates for microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O110.007088

Probity: a protein identification algorithm with accurate assignment of the statistical significance of the results

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O110.007088

Qscore: an algorithm for evaluating SEQUEST database search results

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O110.007088

EBP, a program for protein identification using multiple tandem mass spectrometry datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O110.007088

21 January 2018

Identifiers

DOI

10.1074/MCP.O110.007088

1 reference

10 August 2017

1 reference

10 August 2017

PubMed publication ID

22057310

1 reference