(Q35892812)

11 August 2017

Optimal Dimensionality Reduction of Multistate Kinetic and Markov-State Models (English)

1 reference

11 August 2017

dimensionality reduction

1 reference

Gerhard Hummer

1

0 references

author name string

Attila Szabo

series ordinal

2

1 reference

PMC publication ID

4516310

11 August 2017

language of work or name

English

0 references

publication date

27 October 2014

1 reference

Journal of Physical Chemistry B

11 August 2017

1 reference

11 August 2017

119

1 reference

11 August 2017

29

1 reference

11 August 2017

9029-9037

1 reference

Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Finding transition pathways using the string method with swarms of trajectories

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Absolute comparison of simulated and experimental protein-folding dynamics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Variational Approach to Molecular Kinetics.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

A Bayesian method for construction of Markov models to describe dynamics on various time-scales

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

On the assumptions underlying milestoning

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

A minimum-reaction-flux solution to master-equation models of protein folding

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Coarse master equations for peptide folding dynamics.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

A coarse graining method for the identification of transition rates between molecular conformations.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Coarse master equation from Bayesian analysis of replica molecular dynamics simulations.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Peptide loop-closure kinetics from microsecond molecular dynamics simulations in explicit solvent

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Essential dynamics of reversible peptide folding: memory-free conformational dynamics governed by internal hydrogen bonds.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4516310

Predicting slow structural transitions in macromolecular systems: Conformational flooding

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25296279

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/JP508375Q

1 reference

11 August 2017

1 reference

PMC publication ID

4516310

11 August 2017

PubMed publication ID

25296279

1 reference

PMC publication ID

4516310