(Q35899904)

English

Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease

scientific article published on 21 January 2016

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scholarly article

1 reference

Europe PubMed Central

11 August 2017

Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease (English)

1 reference

Europe PubMed Central

11 August 2017

genome-wide association study

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protein folding

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Parkinson's disease

1 reference

based on heuristic

inferred from title

transcriptomics

1 reference

based on heuristic

inferred from title

5

object named as

Thomas G Beach

1 reference

Europe PubMed Central

11 August 2017

4

object named as

Benbo Gao

1 reference

Europe PubMed Central

11 August 2017

author name string

Alexandra Dumitriu

1

1 reference

Europe PubMed Central

11 August 2017

Javad Golji

2

1 reference

Europe PubMed Central

11 August 2017

Adam T Labadorf

3

1 reference

Europe PubMed Central

11 August 2017

Richard H Myers

6

1 reference

Europe PubMed Central

11 August 2017

Kenneth A Longo

7

1 reference

Europe PubMed Central

11 August 2017

Jeanne C Latourelle

8

1 reference

Europe PubMed Central

11 August 2017

publication date

21 January 2016

1 reference

Europe PubMed Central

11 August 2017

BMC Medical Genomics

1 reference

Europe PubMed Central

11 August 2017

9

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Europe PubMed Central

11 August 2017

5

1 reference

Europe PubMed Central

11 August 2017

describes a project that uses

1 reference

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/4722694

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DESeq

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/s12920-016-0164-y

0 references

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4722694

27 July 2018

Quantitative proteomics reveal a feedforward mechanism for mitochondrial PARKIN translocation and ubiquitin chain synthesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4722694

27 July 2018

Systems-based analyses of brain regions functionally impacted in Parkinson's disease reveals underlying causal mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4722694

27 July 2018

Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4722694

27 July 2018

Mass-spectrometry-based draft of the human proteome

1 reference

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27 July 2018

Translational control of immune responses: from transcripts to translatomes

1 reference

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Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing

1 reference

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27 July 2018

Environmental toxins and Parkinson's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4722694

27 July 2018

Variation and genetic control of protein abundance in humans

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27 July 2018

Oxidative and nitrative alpha-synuclein modifications and proteostatic stress: implications for disease mechanisms and interventions in synucleinopathies.

1 reference

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27 July 2018

α-Synuclein and mitochondrial dysfunction in Parkinson's disease

1 reference

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27 July 2018

The central theme of Parkinson's disease: α-synuclein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4722694

27 July 2018

Gene expression profiles in Parkinson disease prefrontal cortex implicate FOXO1 and genes under its transcriptional regulation

1 reference

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27 July 2018

RSeQC: quality control of RNA-seq experiments

1 reference

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27 July 2018

Postmortem Interval Influences α-Synuclein Expression in Parkinson Disease Brain

1 reference

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Psychotropic drug effects on gene transcriptomics relevant to Parkinson's disease

1 reference

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27 July 2018

Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.

1 reference

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The sva package for removing batch effects and other unwanted variation in high-throughput experiments

1 reference

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27 July 2018

Neuroinflammation in Parkinson's disease.

1 reference

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27 July 2018

Neuroprotective and neuroregenerative properties of metallothioneins

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27 July 2018

MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

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27 July 2018

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27 July 2018

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27 July 2018

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

1 reference

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27 July 2018

Control of NF-kappaB activation by the COP9 signalosome

1 reference

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27 July 2018

Global signatures of protein and mRNA expression levels

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27 July 2018

Parkinson's disease: from monogenic forms to genetic susceptibility factors

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27 July 2018

TopHat: discovering splice junctions with RNA-Seq

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27 July 2018

High-resolution mapping of expression-QTLs yields insight into human gene regulation

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27 July 2018

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27 July 2018

Neuronal pentraxin II is highly upregulated in Parkinson's disease and a novel component of Lewy bodies

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27 July 2018

Inflammation in Parkinson's diseases and other neurodegenerative diseases: cause and therapeutic implications.

1 reference

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27 July 2018

Nongenetic causes of Parkinson's disease.

1 reference

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27 July 2018

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

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27 July 2018

Metallothionein protects against oxidative stress-induced lysosomal destabilization

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4722694

27 July 2018

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

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27 July 2018

Cloning of the gene containing mutations that cause PARK8-linked Parkinson's disease

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27 July 2018

Mutations in the glucocerebrosidase gene and Parkinson's disease in Ashkenazi Jews

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Comparing protein abundance and mRNA expression levels on a genomic scale

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27 July 2018

Statistical significance for genomewide studies

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27 July 2018

Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism

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27 July 2018

Mapping of a gene for Parkinson's disease to chromosome 4q21-q23

1 reference

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27 July 2018

Genomic variation. Impact of regulatory variation from RNA to protein

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24 September 2018

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

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24 September 2018

Proteomics: from single molecules to biological pathways

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4722694

24 September 2018

Up-regulation of metallothionein gene expression in parkinsonian astrocytes.

1 reference

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24 September 2018

Decreased glutamic acid decarboxylase mRNA expression in prefrontal cortex in Parkinson's disease

1 reference

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24 September 2018

Sepiapterin reductase expression is increased in Parkinson's disease brain tissue

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24 September 2018

The autosomal recessive juvenile Parkinson disease gene product, parkin, interacts with and ubiquitinates synaptotagmin XI

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IPython: A System for Interactive Scientific Computing

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12 December 2020

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10.1186/S12920-016-0164-Y

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Europe PubMed Central

11 August 2017

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release_37edqllplraulpyvqwm2ztr2lq

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24 November 2022

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11 August 2017

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