(Q35903370)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Gael Yvert

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

author name string

Fabien Filleton

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Florent Chuffart

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Hélène Bottin-Duplus

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

publication date

31 July 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

published in

Epigenetics & Chromatin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

20 February 2020

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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NuA4 links methylation of histone H3 lysines 4 and 36 to acetylation of histones H4 and H3

11 July 2018

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Histone methylation has dynamics distinct from those of histone acetylation in cell cycle reentry from quiescence.

11 July 2018

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The bromodomain of Gcn5 regulates site specificity of lysine acetylation on histone H3

11 July 2018

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Divergence and selectivity of expression-coupled histone modifications in budding yeasts

11 July 2018

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Natural variation of histone modification and its impact on gene expression in the rat genome

11 July 2018

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Genetic basis of metabolome variation in yeast

11 July 2018

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Identification of genetic variants that affect histone modifications in human cells

11 July 2018

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Extensive variation in chromatin states across humans

11 July 2018

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Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription

11 July 2018

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Regulation of the boundaries of accessible chromatin

11 July 2018

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Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae

11 July 2018

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Genetic modifiers of chromatin acetylation antagonize the reprogramming of epi-polymorphisms

11 July 2018

1 reference

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A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern.

11 July 2018

1 reference

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Genome-wide nucleosome specificity and directionality of chromatin remodelers.

11 July 2018

1 reference

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Fast gapped-read alignment with Bowtie 2

11 July 2018

1 reference

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Nucleosome positioning in Saccharomyces cerevisiae.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Nascent transcript sequencing visualizes transcription at nucleotide resolution

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Differential expression analysis for sequence count data

11 July 2018

1 reference

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Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain

11 July 2018

1 reference

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Natural single-nucleosome epi-polymorphisms in yeast.

11 July 2018

1 reference

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Heritable individual-specific and allele-specific chromatin signatures in humans

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Genetic control of individual differences in gene-specific methylation in human brain.

11 July 2018

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

11 July 2018

1 reference

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High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

11 July 2018

1 reference

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Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Genome-wide allele- and strand-specific expression profiling

11 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

11 July 2018

1 reference

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Population genomics of domestic and wild yeasts

11 July 2018

1 reference

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Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants

11 July 2018

1 reference

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Two strategies for gene regulation by promoter nucleosomes

11 July 2018

1 reference

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Gene-environment interaction in yeast gene expression

11 July 2018

1 reference

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Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.

11 July 2018

1 reference

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The Sas3p and Gcn5p histone acetyltransferases are recruited to similar genes.

11 July 2018

1 reference

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Epigenetic natural variation in Arabidopsis thaliana

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Genetic properties influencing the evolvability of gene expression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Genetic complexity and quantitative trait loci mapping of yeast morphological traits

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Population genomic analysis of outcrossing and recombination in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Genome-wide map of nucleosome acetylation and methylation in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Single-nucleosome mapping of histone modifications in S. cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Local regulatory variation in Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Functional genomic analysis of the rates of protein evolution

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Saccharomyces cerevisiae multidrug transporter Qdr2p (Yil121wp): localization and function as a quinidine resistance determinant.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Versatile and open software for comparing large genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Genetic dissection of transcriptional regulation in budding yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Crystal structure of the worm NitFhit Rosetta Stone protein reveals a Nit tetramer binding two Fhit dimers

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Natural epigenetic variation in the female great roundleaf bat (Hipposideros armiger) populations

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA).

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

The Gcn5 bromodomain of the SAGA complex facilitates cooperative and cross-tail acetylation of nucleosomes

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4520285

Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13072-015-0019-3

A genetic signature of interspecies variations in gene expression

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26229551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26229551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13072-015-0019-3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

20 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

26229551

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26229551%20AND%20SRC:MED&resulttype=core&format=json