(Q35910444)

11 August 2017

The Transition of Poised RNA Polymerase II to an Actively Elongating State Is a "Complex" Affair (English)

1 reference

11 August 2017

Marie N Yearling

1

1 reference

11 August 2017

Catherine A Radebaugh

series ordinal

2

1 reference

11 August 2017

Laurie A Stargell

series ordinal

3

1 reference

11 August 2017

12 October 2011

1 reference

Genetics Research International

11 August 2017

1 reference

11 August 2017

2011

1 reference

11 August 2017

206290

1 reference

Creative Commons Attribution 3.0 Unported

11 August 2017

start time

12 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation

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Rapid activity-induced transcription of Arc and other IEGs relies on poised RNA polymerase II

11 July 2018

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Paused RNA polymerase II as a developmental checkpoint

11 July 2018

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Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells

11 July 2018

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Direct interaction of RNA polymerase II and mediator required for transcription in vivo.

11 July 2018

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Nascent transcript sequencing visualizes transcription at nucleotide resolution

11 July 2018

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A complete set of nascent transcription rates for yeast genes

11 July 2018

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Control of chromatin structure by spt6: different consequences in coding and regulatory regions

11 July 2018

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Structure and Biological Importance of the Spn1-Spt6 Interaction, and Its Regulatory Role in Nucleosome Binding

11 July 2018

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Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.

11 July 2018

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Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation

11 July 2018

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The structure of an Iws1/Spt6 complex reveals an interaction domain conserved in TFIIS, Elongin A and Med26

11 July 2018

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The Transcription Factor Spn1 Regulates Gene Expression via a Highly Conserved Novel Structural Motif

11 July 2018

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Uniform transitions of the general RNA polymerase II transcription complex

11 July 2018

1 reference

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p53 activates transcription by directing structural shifts in Mediator

11 July 2018

1 reference

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Transcript Elongation by RNA Polymerase II.

11 July 2018

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Multiple faces of the SAGA complex

11 July 2018

1 reference

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Mediator head module structure and functional interactions

11 July 2018

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Arabidopsis IWS1 interacts with transcription factor BES1 and is involved in plant steroid hormone brassinosteroid regulated gene expression

11 July 2018

1 reference

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Activation of a poised RNAPII-dependent promoter requires both SAGA and mediator

11 July 2018

1 reference

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Regulon-specific control of transcription elongation across the yeast genome

11 July 2018

1 reference

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Insights into SAGA function during gene expression

11 July 2018

1 reference

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FACT and Asf1 regulate nucleosome dynamics and coactivator binding at the HO promoter

11 July 2018

1 reference

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SWI/SNF and Asf1p cooperate to displace histones during induction of the saccharomyces cerevisiae HO promoter

11 July 2018

1 reference

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Spt6 enhances the elongation rate of RNA polymerase II in vivo

11 July 2018

1 reference

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The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Sus1 is recruited to coding regions and functions during transcription elongation in association with SAGA and TREX2.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

The transcriptional coactivators SAGA, SWI/SNF, and mediator make distinct contributions to activation of glucose-repressed genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Mediator-dependent recruitment of TFIIH modules in preinitiation complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

An in vivo map of the yeast protein interactome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Sir2 silences gene transcription by targeting the transition between RNA polymerase II initiation and elongation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Spn1 regulates the recruitment of Spt6 and the Swi/Snf complex during transcriptional activation by RNA polymerase II

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

RNA polymerase is poised for activation across the genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

A chromatin landmark and transcription initiation at most promoters in human cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Chromatin disassembly from the PHO5 promoter is essential for the recruitment of the general transcription machinery and coactivators

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Chromatin remodeling by nucleosome disassembly in vitro

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Occupancy of the Drosophila hsp70 promoter by a subset of basal transcription factors diminishes upon transcriptional activation.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

A high-resolution map of active promoters in the human genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Interdependent recruitment of SAGA and Srb mediator by transcriptional activator Gcn4p

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Mediator requirement for both recruitment and postrecruitment steps in transcription initiation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

H2B ubiquitylation and de-ubiquitylation in gene activation.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Human Spt6 stimulates transcription elongation by RNA polymerase II in vitro

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Deubiquitination of histone H2B by a yeast acetyltransferase complex regulates transcription.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Transcription elongation factors repress transcription initiation from cryptic sites.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

RNA polymerase II accumulation in the promoter-proximal region of the dihydrofolate reductase and gamma-actin genes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

SPN1, a conserved gene identified by suppression of a postrecruitment-defective yeast TATA-binding protein mutant

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Functional organization of the yeast proteome by systematic analysis of protein complexes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Mediator, not holoenzyme, is directly recruited to the heat shock promoter by HSF upon heat shock

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

SAGA is an essential in vivo target of the yeast acidic activator Gal4p

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Functional connections between mediator components and general transcription factors of Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Feasting, fasting and fermenting. Glucose sensing in yeast and other cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Transcriptional activators direct histone acetyltransferase complexes to nucleosomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Evidence that Spt6p controls chromatin structure by a direct interaction with histones

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Phosphorylation of C-terminal domain of RNA polymerase II is not required in basal transcription

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

The structural gene for yeast cytochrome C

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Suppressors of SNF2 mutations restore invertase derepression and cause temperature-sensitive lethality in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

CTD kinase associated with yeast RNA polymerase II initiation factor b.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

A carboxyl-terminal-domain kinase associated with RNA polymerase II transcription factor delta from rat liver

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335657

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

11 July 2018

1 reference

https://api.crossref.org/works/10.4061%2F2011%2F206290

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

21 January 2018

1 reference

https://api.crossref.org/works/10.4061%2F2011%2F206290

RNA polymerase II and TBP occupy the repressed CYC1 promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.4061%2F2011%2F206290

Screening the yeast "disruptome" for mutants affecting resistance to the immunosuppressive drug, mycophenolic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.4061%2F2011%2F206290

Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.4061%2F2011%2F206290

Gcn5 facilitates Pol II progression, rather than recruitment to nucleosome-depleted stress promoters, in Schizosaccharomyces pombe.

21 January 2018

1 reference

https://api.crossref.org/works/10.4061%2F2011%2F206290

The histone chaperone Asf1 increases the rate of histone eviction at the yeast PHO5 and PHO8 promoters.

21 January 2018

1 reference

https://api.crossref.org/works/10.4061%2F2011%2F206290

Human general transcription factor IIH phosphorylates the C-terminal domain of RNA polymerase II

21 January 2018

1 reference

https://api.crossref.org/works/10.4061%2F2011%2F206290

A simple in vivo assay for measuring the efficiency of gene length-dependent processes in yeast mRNA biogenesis

21 January 2018

1 reference

12 December 2020

Distinctly regulated tandem upstream activation sites mediate catabolite repression of the CYC1 gene of S. cerevisiae

1 reference

12 December 2020

Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site

1 reference

12 December 2020

Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction

1 reference

12 December 2020

Identifiers

DOI

10.4061/2011/206290

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

22567346

1 reference