(Q35940506)

English

Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus

scientific article

Determining threshold values for barcoding fungi: lessons fromCortinarius(Basidiomycota), a highly diverse and widespread ectomycorrhizal genus

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus (English)

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

1 reference

based on heuristic

inferred from title

Tobias Guldberg Frøslev

9

object named as

Tobias Guldberg Frøslev

0 references

Thomas Stjernegaard Jeppesen

10

object named as

Thomas Stjernegaard Jeppesen

0 references

Kessy Abarenkov

3

object named as

Kessy Abarenkov

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Max Emil Schön

object named as

Max Emil Schön

2

0 references

object named as

Kai Riess

4

0 references

Ursula Peintner

object named as

Ursula Peintner

11

0 references

6

object named as

Tuula Niskanen

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

8

object named as

Karl Soop

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

7

object named as

Bálint Dima

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

author name string

Sigisfredo Garnica

1

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Kare Liimatainen

5

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Tobias Guldberg Frøslev

9

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Regina Kuhnert-Finkernagel

12

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Tor Erik Brandrud

13

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Günter Saar

14

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Bernhard Oertel

15

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Joseph F Ammirati

16

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

publication date

28 February 2016

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

FEMS Microbiology Ecology

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

92

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

4

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

fiw045

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

The effect of geographical scale of sampling on DNA barcoding

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

ITS1 versus ITS2 as DNA metabarcodes for fungi.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Fast statistical alignment

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

A tri-oceanic perspective: DNA barcoding reveals geographic structure and cryptic diversity in Canadian polychaetes

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Ecology. Barcoding of plants and fungi.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Comparing COI and ITS as DNA barcode markers for mushrooms and allies (Agaricomycotina).

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Complete DNA barcode reference library for a country's butterfly fauna reveals high performance for temperate Europe.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

UCHIME improves sensitivity and speed of chimera detection

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Molecular phylogenetics and delimitation of species in Cortinarius section Calochroi (Basidiomycota, Agaricales) in Europe

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Tracking the evolutionary history of Cortinarius species in section Calochroi, with transoceanic disjunct distributions

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Phylogenetic relationships in Cortinarius, section Calochroi, inferred from nuclear DNA sequences

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

A framework for a phylogenetic classification in the genus Cortinarius (Basidiomycota, Agaricales) derived from morphological and molecular data

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Forensic identification of CITES protected slimming cactus (Hoodia) using DNA barcoding.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Molecular taxonomy of phytopathogenic fungi: a case study in Peronospora

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Biological identifications through DNA barcodes

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

DNA barcodes for 1/1000 of the animal kingdom

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Identification of Birds through DNA Barcodes

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

A DNA barcode for land plants

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Choosing and using a plant DNA barcode

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Local adaptation along smooth ecological gradients causes phylogeographic breaks and phenotypic clustering

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

The role of ecologic diversification in sibling speciation of Empidonax flycatchers (Tyrannidae): multigene evidence from mtDNA.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

MAFFT version 5: improvement in accuracy of multiple sequence alignment

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Recent developments in the MAFFT multiple sequence alignment program

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Delimiting species without monophyletic gene trees

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Towards a unified paradigm for sequence-based identification of fungi

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

DNA barcodes: genes, genomics, and bioinformatics

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

DNA barcoding the floras of biodiversity hotspots

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Multiple sequence alignment using partial order graphs

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

The largest type study of Agaricales species to date: bringing identification and nomenclature of Phlegmacium (Cortinarius) into the DNA era

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

DNA barcoding: error rates based on comprehensive sampling

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

DNA barcoding: promise and pitfalls

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Evolution of rDNA ITS1 and ITS2 sequences and RNA secondary structures within members of the fungal genera Grosmannia and Leptographium.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Cortinarius sect. Brunnei (Basidiomycota, Agaricales) in North Europe.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Cortinarius sect. Armillati in northern Europe.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

The species of Cortinarius, section Bovini, associated with conifers in northern Europe

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Assessing the efficiency of multiple sequence alignment programs

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

High genetic diversity at the regional scale and possible speciation in Sebacina epigaea and S. incrustans

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Molecular operational taxonomic units as approximations of species in the light of evolutionary models and empirical data from Fungi

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Positive outcomes influence the rate and time to publication, but not the impact factor of publications of clinical trial results

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Concordance of seven gene genealogies compared to phenotypic data reveals multiple cryptic species in Australian dermocyboid Cortinarius (Agaricales).

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Environmental barcoding reveals massive dinoflagellate diversity in marine environments

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

DNA barcoding of recently diverged species: relative performance of matching methods

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Estimation of evolutionary distances between nucleotide sequences.

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Toward a better understanding of the infrageneric relationships in Cortinarius (Agaricales, Basidiomycota).

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Environmental barcoding of the ectomycorrhizal fungal genus Cortinarius

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota)

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context

1 reference

https://api.crossref.org/works/10.1093%2FFEMSEC%2FFIW045

21 January 2018

Identifiers

10.1093/FEMSEC/FIW045

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

11 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q35940506&oldid=1881227793"